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KY921761.1__ARQ95223.1__BEACHBUM_10__00010
Bact-VirKY921761.1__ARQ95223.1__BEACHBUM_10__00010
Identity
- Accession:
- KY921761 ↗
- Kingdom:
- phage
Quality
80.1
mean pLDDT
Taxonomy
TaxID: 1983461
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-90
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20763.3 best | UDG-inhib_P56 | 85.2 | 2.80e-24 | 60.2% | 96.2% |
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qwmA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.80 | 53.0 | 4.68e-01 | 100.0% | 47.2% |
| 4jn7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.78 | 47.0 | 4.25e-01 | 98.9% | 45.4% |
| 3msyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.77 | 48.0 | 4.46e-01 | 98.9% | 50.5% |
| 5xd7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.73 | 51.0 | 4.43e-01 | 95.5% | 49.6% |
| 3cetB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.73 | 42.0 | 3.91e-01 | 96.6% | 45.5% |
| 1bqgA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.70 | 49.0 | 4.17e-01 | 98.9% | 46.4% |
| 3ugvA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.69 | 52.0 | 4.54e-01 | 98.9% | 54.8% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.68 | 34.0 | 4.16e-01 | 75.0% | 75.0% |
| 4gxbA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 47.0 | 4.43e-01 | 100.0% | 61.5% |
| 2d42A02 | 3.10.450.380 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 36.0 | 4.06e-01 | 81.8% | 70.8% |
| 2pmqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.65 | 51.0 | 4.40e-01 | 95.5% | 55.8% |
| 3jvaA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.64 | 49.0 | 4.45e-01 | 95.5% | 61.4% |
| 1tkkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.63 | 50.0 | 4.55e-01 | 98.9% | 63.5% |
| 2gdqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 43.0 | 4.06e-01 | 95.5% | 61.7% |
| 2jmuA01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.59 | 41.0 | 3.13e-01 | 71.6% | 78.4% |
| 2a9sB00 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.59 | 41.0 | 3.36e-01 | 98.9% | 38.8% |
| 3lh4A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 38.0 | 3.46e-01 | 75.0% | 50.4% |
| 2gfgA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.57 | 39.0 | 3.01e-01 | 94.3% | 31.9% |
| 1wfnA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 38.0 | 3.88e-01 | 76.1% | 69.3% |
| 1vq0A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.55 | 45.0 | 3.42e-01 | 94.3% | 51.5% |
| 1hw7A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.54 | 46.0 | 3.79e-01 | 97.7% | 68.2% |
| 3q48A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 34.0 | 3.57e-01 | 80.7% | 68.7% |
| 3dgcS01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.86e-01 | 80.7% | 67.6% |
| 6wwdB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.54 | 44.0 | 3.47e-01 | 89.8% | 64.7% |
| 4a8jB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 37.0 | 2.83e-01 | 81.8% | 29.1% |
| 6cxhA03 | 2.60.40.1580 | Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 | 0.53 | 38.0 | 3.36e-01 | 76.1% | 72.1% |
| 6lkzC01 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.53 | 40.0 | 2.70e-01 | 81.8% | 51.8% |
| 3pqvA02 | 3.30.360.20 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain | 0.53 | 43.0 | 4.26e-01 | 90.9% | 93.8% |
| 3ddvB01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.53 | 37.0 | 3.21e-01 | 89.8% | 46.7% |
| 6x5vA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.60e-01 | 75.0% | 67.7% |
| 5irbA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.57e-01 | 76.1% | 95.2% |
| 1kczA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 45.0 | 3.66e-01 | 95.5% | 60.1% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.51 | 46.0 | 3.56e-01 | 100.0% | 79.3% |
| 2vr3B02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 36.0 | 3.02e-01 | 73.9% | 74.8% |
| 3k5iA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 42.0 | 3.36e-01 | 94.3% | 83.8% |
| 2petA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 3.34e-01 | 75.0% | 69.0% |
| 1ix2A00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 36.0 | 3.49e-01 | 76.1% | 73.5% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.50 | 36.0 | 3.26e-01 | 77.3% | 88.1% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3883825 | 220.1.1.173 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK | 0.75 | 49.0 | 4.41e-01 | 100.0% | 50.0% |
| 3216916 | 220.1.1.23 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ICAP-1_inte_bdg | 0.75 | 49.0 | 4.07e-01 | 100.0% | 39.3% |
| 3228242 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.74 | 53.0 | 5.09e-01 | 100.0% | 66.0% |
| 3589803 | 2484.1.1.144 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 | 0.70 | 42.0 | 4.02e-01 | 92.0% | 52.0% |
| 5035423 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.70 | 35.0 | 3.58e-01 | 80.7% | 49.4% |
| 3593375 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.69 | 40.0 | 4.80e-01 | 84.1% | 86.7% |
| 3719687 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.68 | 40.0 | 4.27e-01 | 95.5% | 66.7% |
| 5038844 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.68 | 40.0 | 4.23e-01 | 90.9% | 65.0% |
| 3592269 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 44.0 | 3.83e-01 | 92.0% | 44.4% |
| 3678038 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.66 | 43.0 | 4.61e-01 | 98.9% | 77.3% |
| 3971108 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 42.0 | 4.26e-01 | 100.0% | 63.3% |
| 4027577 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 44.0 | 3.89e-01 | 96.6% | 48.0% |
| 3701275 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.65 | 44.0 | 3.76e-01 | 92.0% | 42.9% |
| 3710325 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 41.0 | 4.33e-01 | 90.9% | 71.2% |
| 3667340 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.65 | 42.0 | 3.79e-01 | 95.5% | 47.2% |
| 5053329 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 41.0 | 3.75e-01 | 95.5% | 47.5% |
| 3080512 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.64 | 38.0 | 3.71e-01 | 94.3% | 53.6% |
| 3278704 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.63 | 43.0 | 4.56e-01 | 95.5% | 78.8% |
| 4028996 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 36.0 | 3.05e-01 | 92.0% | 33.1% |
| 4087213 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.63 | 36.0 | 3.90e-01 | 90.9% | 66.7% |
| 3253057 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 53.0 | 4.37e-01 | 100.0% | 52.3% |
| 3992484 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 56.0 | 5.02e-01 | 100.0% | 73.3% |
| 4320111 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.61 | 37.0 | 3.61e-01 | 97.7% | 53.0% |
| 3226466 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.61 | 41.0 | 3.59e-01 | 92.0% | 46.9% |
| 3269184 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 46.0 | 4.47e-01 | 94.3% | 73.7% |
| 3342794 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.60 | 40.0 | 4.02e-01 | 93.2% | 66.7% |
| 3170899 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.58 | 48.0 | 4.55e-01 | 89.8% | 99.0% |
| 3707452 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 44.0 | 3.72e-01 | 84.1% | 75.8% |
| 3238035 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 31.0 | 3.83e-01 | 95.5% | 92.0% |
| 4389388 | 848.1.1.1 ↗ | a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 | 0.56 | 46.0 | 3.44e-01 | 93.2% | 49.0% |
| 3466381 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 37.0 | 3.48e-01 | 86.4% | 56.4% |
| 4982346 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 39.0 | 3.71e-01 | 75.0% | 64.8% |
| 4290012 | 848.1.1.1 ↗ | a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 | 0.54 | 44.0 | 3.36e-01 | 94.3% | 53.3% |
| 5051724 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 3.65e-01 | 75.0% | 64.0% |
| 5038464 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 3.63e-01 | 75.0% | 65.7% |
| 3722095 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.54 | 40.0 | 2.73e-01 | 79.5% | 23.8% |
| 5055680 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 3.50e-01 | 75.0% | 60.9% |
| 3511040 | 2485.2.1.1 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert | 0.53 | 45.0 | 4.33e-01 | 94.3% | 92.0% |
| 3487886 | 2485.2.1.0 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain | 0.53 | 44.0 | 4.26e-01 | 95.5% | 91.4% |
| 4463884 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.52 | 37.0 | 3.45e-01 | 92.0% | 57.4% |
| 4001313 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 44.0 | 3.55e-01 | 94.3% | 46.9% |
| 3756543 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.52 | 38.0 | 3.12e-01 | 92.0% | 41.8% |
| 4961901 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.52 | 46.0 | 3.62e-01 | 100.0% | 53.7% |
| 3266908 | 2485.2.1.1 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert | 0.51 | 42.0 | 4.08e-01 | 90.9% | 92.0% |
| 3199571 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.51 | 41.0 | 3.69e-01 | 89.8% | 98.4% |
| 3962941 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.51 | 42.0 | 2.97e-01 | 100.0% | 28.9% |
| 3525968 | 11.1.1.102 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD | 0.50 | 37.0 | 3.47e-01 | 76.1% | 69.5% |