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KY940711.1__ARQ95270.1__X__00038

Bact-Vir

KY940711.1__ARQ95270.1__X__00038

Identity

Accession:
KY940711 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_BDU-MI-1

TaxID: 1983459

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 59-173
PDB
Domain cluster: rep: NC_048832.1__YP_009854700.1__HWC88_gp48__00048__D42-135
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.72 54.0 5.07e-01 84.3% 64.5%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.70 42.0 4.71e-01 87.0% 78.2%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.61 29.0 2.92e-01 73.0% 43.0%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 24.0 2.92e-01 75.7% 53.2%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.60 23.0 3.23e-01 71.3% 70.2%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.56 34.0 4.05e-01 90.4% 90.9%
2wdoA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.55 33.0 3.29e-01 89.6% 56.1%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 31.0 3.91e-01 70.4% 94.1%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.53 33.0 3.25e-01 89.6% 56.8%
4hfvA02 6.10.280.170 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Substrate of the Dot/Icm secretion system 0.53 30.0 3.61e-01 100.0% 87.3%
1pg2A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 35.0 2.55e-01 85.2% 23.5%
1jphA00 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.50 38.0 2.74e-01 80.0% 66.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079949 829.1.1.3 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB › DUF1367 0.85 67.0 7.36e-01 83.5% 98.9%
3980273 829.1.1.3 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB › DUF1367 0.85 68.0 6.59e-01 83.5% 80.0%
7698 829.1.1.1 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB 0.72 54.0 5.07e-01 84.3% 64.5%
3367 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.70 42.0 4.71e-01 87.0% 78.2%
3205290 109.26.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C 0.61 41.0 2.52e-01 87.0% 10.1%
3635090 109.26.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C 0.61 41.0 3.11e-01 87.0% 27.7%
3714022 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.59 30.0 3.82e-01 87.0% 88.3%
3615029 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.58 34.0 3.78e-01 91.3% 73.3%
2722164 4275.1.1.6 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube 0.56 41.0 3.43e-01 75.7% 76.4%
3701149 3548.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription submodule Med7N/31 › Mediator of RNA polymerase II transcription submodule Med7N/31 › Mediator of RNA polymerase II transcription submodule Med7N/31 0.56 32.0 3.46e-01 99.1% 66.3%
5075529 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.55 39.0 3.81e-01 73.9% 76.0%
4612385 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.54 35.0 3.95e-01 80.9% 87.1%
3705380 857.1.1.19 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › Ax_dynein_light 0.54 37.0 3.71e-01 83.5% 68.7%
3367845 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 32.0 3.01e-01 70.4% 47.6%
4043003 601.7.1.6 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase 0.53 35.0 3.11e-01 97.4% 44.7%
3420946 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 33.0 3.95e-01 73.0% 100.0%
3710097 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.87e-01 87.8% 85.7%
3609765 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 37.0 2.50e-01 79.1% 44.5%
3687446 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 33.0 3.62e-01 86.1% 81.1%