←Back to structures
KY940711.1__ARQ95272.1__X__00040
Bact-VirKY940711.1__ARQ95272.1__X__00040
Identity
- Accession:
- KY940711 ↗
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-74
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1o9gA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.68 | 51.0 | 3.76e-01 | 100.0% | 29.1% |
| 2qmlA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 53.0 | 3.99e-01 | 100.0% | 35.8% |
| 5x6vF00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.62 | 40.0 | 3.48e-01 | 91.9% | 41.5% |
| 2esnA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.61 | 40.0 | 3.54e-01 | 83.8% | 45.0% |
| 4i0wA00 | 3.30.70.2980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 48.0 | 4.58e-01 | 98.6% | 79.3% |
| 1hn0A04 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.56 | 46.0 | 4.05e-01 | 95.9% | 79.5% |
| 5ktaA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 48.0 | 3.75e-01 | 100.0% | 61.8% |
| 1pbyA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 39.0 | 3.95e-01 | 97.3% | 72.4% |
| 2gukA00 | 3.30.2190.10 | Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like | 0.55 | 44.0 | 3.85e-01 | 87.8% | 59.5% |
| 4bc3A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 39.0 | 2.90e-01 | 77.0% | 87.0% |
| 2k6vA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 40.0 | 3.14e-01 | 79.7% | 55.2% |
| 1mkfA02 | 2.60.40.1340 | Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like | 0.54 | 44.0 | 3.56e-01 | 98.6% | 96.5% |
| 3uxfA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 45.0 | 3.51e-01 | 94.6% | 68.1% |
| 4v2bA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 4.02e-01 | 94.6% | 84.9% |
| 8ediA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.97e-01 | 93.2% | 73.1% |
| 2x1wL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 3.99e-01 | 94.6% | 90.5% |
| 4q9cA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 3.99e-01 | 95.9% | 92.4% |
| 4of8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 45.0 | 4.05e-01 | 95.9% | 90.3% |
| 2ednA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.80e-01 | 94.6% | 82.2% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 43.0 | 4.08e-01 | 98.6% | 87.4% |
| 1ow0A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.87e-01 | 94.6% | 93.0% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 39.0 | 3.89e-01 | 89.2% | 75.9% |
| 1iamA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 4.30e-01 | 95.9% | 91.6% |
| 3f8uD03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.93e-01 | 97.3% | 91.5% |
| 1hcfX00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 43.0 | 3.93e-01 | 94.6% | 86.1% |
| 1kxqE00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.69e-01 | 94.6% | 93.3% |
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.75e-01 | 98.6% | 63.9% |
| 4m9pA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 43.0 | 3.93e-01 | 95.9% | 85.0% |
| 3vsmA02 | 2.70.98.100 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Baculovirus E66 occlusion-derived virus envelope protein, domain 2 | 0.51 | 42.0 | 3.22e-01 | 95.9% | 65.1% |
| 2esrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 40.0 | 3.23e-01 | 89.2% | 51.9% |
| 1c16A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.88e-01 | 94.6% | 90.7% |
| 5x6vG00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 39.0 | 3.20e-01 | 82.4% | 59.8% |
| 6vfqA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.50 | 43.0 | 3.80e-01 | 100.0% | 64.9% |
| 6aieA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 40.0 | 3.07e-01 | 89.2% | 46.7% |
| 2dpnA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 42.0 | 3.04e-01 | 98.6% | 42.6% |
| 3mjgX03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 40.0 | 3.75e-01 | 94.6% | 90.1% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4022846 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 43.0 | 3.03e-01 | 100.0% | 20.0% |
| 3865345 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 54.0 | 3.87e-01 | 97.3% | 52.1% |
| 3837802 | 2003.1.5.185 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF28720 | 0.62 | 55.0 | 4.30e-01 | 100.0% | 63.1% |
| 3831906 | 2003.1.5.185 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF28720 | 0.61 | 54.0 | 4.29e-01 | 98.6% | 65.3% |
| 5033794 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.61 | 39.0 | 4.13e-01 | 81.1% | 73.8% |
| 4134403 | 109.4.1.613 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Asp_Glu_race_2 | 0.60 | 51.0 | 3.29e-01 | 98.6% | 30.8% |
| 3823396 | 2003.1.5.185 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF28720 | 0.60 | 53.0 | 3.97e-01 | 100.0% | 50.0% |
| 3823304 | 101.1.2.667 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28720 | 0.60 | 52.0 | 4.09e-01 | 100.0% | 57.6% |
| 3262490 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 46.0 | 4.63e-01 | 87.8% | 100.0% |
| 4996241 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 3.66e-01 | 79.7% | 67.5% |
| 3918547 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 49.0 | 3.56e-01 | 100.0% | 52.0% |
| 4529537 | 327.11.2.11 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 | 0.56 | 38.0 | 3.16e-01 | 71.6% | 62.8% |
| 4857752 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.55 | 47.0 | 4.22e-01 | 97.3% | 87.5% |
| 3556565 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.54 | 46.0 | 4.12e-01 | 94.6% | 89.5% |
| 3594109 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 48.0 | 3.84e-01 | 100.0% | 50.7% |
| 5070720 | 205.1.1.33 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_10 | 0.54 | 44.0 | 3.94e-01 | 93.2% | 76.4% |
| 3394335 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.54 | 44.0 | 3.47e-01 | 94.6% | 53.5% |
| 5035459 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.54 | 45.0 | 4.33e-01 | 94.6% | 92.9% |
| 4987838 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.54 | 42.0 | 3.32e-01 | 86.5% | 78.8% |
| 1145674 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.53 | 45.0 | 4.01e-01 | 95.9% | 87.7% |
| 1168392 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.52 | 43.0 | 3.44e-01 | 94.6% | 65.4% |
| 3413772 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.52 | 43.0 | 4.00e-01 | 94.6% | 91.6% |
| 3862727 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.52 | 43.0 | 3.91e-01 | 94.6% | 84.8% |
| 3271747 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.52 | 40.0 | 3.40e-01 | 83.8% | 79.2% |
| 3552103 | 11.1.1.587 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR1-3_N_Ig-like | 0.52 | 43.0 | 3.32e-01 | 95.9% | 79.5% |
| 3883937 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.52 | 43.0 | 4.03e-01 | 95.9% | 89.5% |
| 5083279 | 11.31.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Beta-galactosidase LacA beta-sandwich domain › Beta-galactosidase LacA beta-sandwich domain | 0.51 | 41.0 | 4.23e-01 | 97.3% | 97.1% |
| 3932985 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 43.0 | 3.43e-01 | 100.0% | 60.6% |
| 3572244 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.51 | 42.0 | 3.91e-01 | 97.3% | 75.0% |
| 4993906 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 43.0 | 3.47e-01 | 100.0% | 49.3% |
| 3495453 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 43.0 | 3.65e-01 | 97.3% | 87.2% |
| 4309635 | 2484.1.1.32 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C | 0.50 | 43.0 | 3.13e-01 | 100.0% | 42.2% |
| None | — | 0.50 | 39.0 | 2.97e-01 | 85.1% | 58.3% | |
| 3956780 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.50 | 34.0 | 3.41e-01 | 73.0% | 88.7% |