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KY940711.1__ARQ95292.1__X__00060

Bact-Vir

KY940711.1__ARQ95292.1__X__00060

Identity

Accession:
KY940711 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_BDU-MI-1

TaxID: 1983459

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-68
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05930.19 best Phage_AlpA 34.0 2.90e-08 87.3% 88.2%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 65.0 4.92e-01 100.0% 40.0%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 64.0 4.90e-01 100.0% 43.1%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 62.0 4.89e-01 100.0% 44.4%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 63.0 5.06e-01 100.0% 49.6%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 61.0 5.84e-01 100.0% 82.1%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 61.0 5.67e-01 100.0% 78.1%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.70 60.0 5.02e-01 100.0% 55.6%
1z4hA01 1.10.238.160 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.69 58.0 5.77e-01 100.0% 93.1%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.66 55.0 4.13e-01 96.4% 70.1%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 4.88e-01 100.0% 64.8%
4y4mC00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 49.0 3.15e-01 100.0% 17.6%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 4.32e-01 100.0% 49.6%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.64 52.0 4.88e-01 96.4% 85.7%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 54.0 4.64e-01 100.0% 68.9%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.00e-01 100.0% 41.4%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.50e-01 100.0% 65.5%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.01e-01 85.5% 57.9%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 4.44e-01 98.2% 64.7%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.17e-01 100.0% 58.1%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.35e-01 96.4% 67.9%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.23e-01 94.5% 69.0%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.58 48.0 3.28e-01 100.0% 60.9%
1xmkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.25e-01 92.7% 64.6%
1u5tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.98e-01 85.5% 67.6%
3n2oA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.55 39.0 2.56e-01 78.2% 32.6%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 3.94e-01 98.2% 55.1%
5ovnA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.54 40.0 3.50e-01 85.5% 68.1%
3a2vD02 3.30.1020.10 Alpha Beta › 2-Layer Sandwich › Antioxidant, Horf6; Chain A, domain 2 › Antioxidant, Horf6; Chain A, domain2 0.53 36.0 3.05e-01 70.9% 67.4%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.49e-01 83.6% 80.6%
7k36H01 1.20.140.30 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator 0.51 43.0 3.15e-01 100.0% 56.1%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.50 43.0 3.75e-01 100.0% 76.1%
1kgdA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.50 40.0 4.00e-01 98.2% 90.0%
2zzzA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.50 41.0 4.01e-01 96.4% 93.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943951 101.1.9.45 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_AlpA 0.90 79.0 7.41e-01 98.2% 80.0%
5027627 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.85 75.0 7.51e-01 100.0% 98.2%
3965196 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.80 69.0 6.78e-01 98.2% 91.7%
3954861 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.77 65.0 6.53e-01 100.0% 96.4%
3589820 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.77 67.0 5.19e-01 100.0% 44.8%
4197446 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.77 66.0 5.05e-01 100.0% 41.5%
3970754 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.77 67.0 5.98e-01 100.0% 70.0%
3286117 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.77 68.0 5.20e-01 100.0% 44.0%
4031764 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.77 68.0 5.04e-01 100.0% 67.4%
4470278 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.76 65.0 5.21e-01 100.0% 48.7%
1394838 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 65.0 4.92e-01 100.0% 40.0%
2967124 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.76 60.0 5.62e-01 90.9% 71.0%
3288603 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 65.0 5.97e-01 100.0% 76.0%
3279459 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.76 66.0 5.11e-01 100.0% 44.7%
4488952 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.76 66.0 5.31e-01 100.0% 76.4%
3587879 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.75 65.0 5.26e-01 100.0% 50.9%
4096952 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 66.0 5.19e-01 98.2% 56.5%
3288205 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 65.0 5.82e-01 100.0% 68.8%
3980766 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 66.0 5.28e-01 100.0% 76.4%
2527708 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 65.0 4.86e-01 100.0% 58.7%
3286164 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 62.0 4.15e-01 96.4% 23.5%
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 65.0 5.78e-01 100.0% 68.8%
3278826 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.74 64.0 5.04e-01 100.0% 45.8%
3948487 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.74 64.0 4.85e-01 100.0% 41.5%
4668445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 60.0 6.08e-01 94.5% 94.5%
3290892 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 64.0 5.22e-01 100.0% 53.3%
4284807 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.74 64.0 4.78e-01 100.0% 60.0%
4061721 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 64.0 4.88e-01 100.0% 43.1%
4564454 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 63.0 5.18e-01 100.0% 53.3%
2775358 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 62.0 5.05e-01 100.0% 51.8%
1844183 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 61.0 4.69e-01 100.0% 42.4%
3586960 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 63.0 5.23e-01 100.0% 70.5%
4031520 101.1.9.64 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_23 0.68 57.0 5.51e-01 98.2% 92.3%
4015761 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 4.62e-01 100.0% 63.2%
4954867 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 4.58e-01 100.0% 66.7%
3272721 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.14e-01 98.2% 61.6%
5039413 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 54.0 4.20e-01 100.0% 45.6%
3234185 101.1.2.216 ↗ alpha arrays › HTH › HTH › winged helix domain › CED4_WHD 0.61 51.0 3.93e-01 100.0% 45.7%
3691686 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.61 53.0 3.95e-01 100.0% 40.7%
5077868 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.80e-01 94.5% 81.5%
3712406 2004.1.1.50 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.60 49.0 3.42e-01 96.4% 87.3%
5044919 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.66e-01 100.0% 74.0%
5020992 101.1.2.728 ↗ alpha arrays › HTH › HTH › winged helix domain › PF31122 0.58 49.0 3.99e-01 100.0% 49.1%
5069901 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 4.24e-01 100.0% 64.4%
3972090 101.1.2.668 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28010 0.57 48.0 4.22e-01 96.4% 68.2%
4158334 101.1.2.494 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25873 0.57 48.0 4.19e-01 100.0% 62.2%
4953298 101.1.2.934 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.57 49.0 3.75e-01 100.0% 41.5%
5044549 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 4.07e-01 100.0% 65.3%
4181241 109.4.1.2074 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF25873 0.56 45.0 2.65e-01 94.5% 9.7%
3685754 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 2.83e-01 96.4% 45.6%
3236695 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.61e-01 96.4% 68.0%
4977020 101.1.2.222 ↗ alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.56 46.0 4.18e-01 100.0% 67.5%
4950772 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.92e-01 100.0% 57.0%
3970671 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 34.0 3.13e-01 89.1% 48.0%
5077394 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.53 43.0 3.49e-01 96.4% 47.0%
4948503 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.52 42.0 2.64e-01 92.7% 64.1%
4970541 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.52e-01 94.5% 52.0%
4354223 2004.1.1.192 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.52 43.0 3.15e-01 100.0% 91.4%
4203113 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.52 42.0 3.64e-01 96.4% 57.9%
4671865 213.1.1.14 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_16 0.51 40.0 2.88e-01 94.5% 63.5%
3787913 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 2.69e-01 100.0% 28.9%