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KY940711.1ARQ95300.1X__00068

Bact-Vir

KY940711.1__ARQ95300.1__X__00068

Identity

Accession:: KY940711 ↗
Kingdom:: phage

Quality

94.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_BDU-MI-1

TaxID: 1983459

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-63

PDB

Domain cluster: representative

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5ck3C00	3.30.450.60	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.60	38.0	3.27e-01	77.0%	38.1%
3r7wC02	3.30.450.190	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.60	40.0	3.37e-01	77.0%	39.3%
5oomK00	3.90.1180.10	Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13	0.59	47.0	3.52e-01	93.4%	58.8%
3r8eA01	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.59	49.0	3.82e-01	95.1%	91.4%
1neiA00	3.30.160.220	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG	0.58	44.0	4.45e-01	82.0%	93.3%
8hnzA01	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.58	42.0	2.64e-01	80.3%	38.0%
3q8pB04	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.58	49.0	4.11e-01	96.7%	65.7%
2r7kA03	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.57	41.0	4.12e-01	100.0%	78.7%
3bpnC03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	46.0	3.97e-01	100.0%	56.4%
4gklA02	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.54	36.0	3.27e-01	100.0%	47.7%
1yuzA02	2.20.28.10	Mainly Beta › Single Sheet › Rubrerythrin, domain 2 ›	0.54	31.0	3.62e-01	91.8%	89.5%
3ougA00	2.40.40.20	Mainly Beta › Beta Barrel › Barwin-like endoglucanases ›	0.52	43.0	3.64e-01	100.0%	53.8%
5x6vF00	3.30.450.190	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.52	38.0	3.17e-01	80.3%	43.2%
2fkbC00	3.90.79.10	Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase	0.52	44.0	3.33e-01	100.0%	65.3%
1aw8B00	2.40.40.20	Mainly Beta › Beta Barrel › Barwin-like endoglucanases ›	0.51	41.0	3.70e-01	100.0%	62.6%
1flcB00	3.90.20.10	Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B ›	0.50	37.0	2.88e-01	85.2%	71.6%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3330429	101.1.9.83 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM	0.64	40.0	3.38e-01	91.8%	35.5%
4953502	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.61	37.0	3.64e-01	91.8%	55.4%
3917191	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.59	39.0	4.06e-01	93.4%	76.4%
7739	803.1.1.1 ↗	a+b duplicates or obligate multimers › Hypothetical protein YoaG › Hypothetical protein YoaG › Hypothetical protein YoaG › DUF1869	0.58	44.0	4.45e-01	82.0%	93.3%
3518250	822.2.1.0 ↗	a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like	0.58	34.0	3.81e-01	95.1%	85.0%
3487629	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.58	41.0	3.26e-01	83.6%	34.8%
3167534	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.57	47.0	4.41e-01	91.8%	89.3%
2775442	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.57	40.0	4.10e-01	93.4%	78.0%
4314604	3019.1.1.8 ↗	beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › FlaEY_3rd	0.56	46.0	4.10e-01	96.7%	80.0%
3389022	379.1.1.0 ↗	few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors	0.55	36.0	3.84e-01	100.0%	82.0%
4505111	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.55	40.0	4.19e-01	91.8%	89.1%
3898196	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.54	41.0	4.27e-01	95.1%	94.5%
3196947	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.54	47.0	2.73e-01	100.0%	10.6%
3594058	3346.1.1.0 ↗	a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2	0.53	44.0	3.04e-01	95.1%	27.6%
1147340	386.1.1.20 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met	0.51	31.0	3.19e-01	82.0%	61.7%
3921494	376.1.3.6 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-CW	0.50	34.0	3.70e-01	75.4%	88.0%

D2 medium residues 66-97

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1gaxA05	1.10.287.380	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain	0.59	42.0	3.36e-01	78.1%	42.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4673	192.7.1.4 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C	0.59	42.0	3.46e-01	78.1%	47.0%