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KY940711.1__ARQ95302.1__X__00070

Bact-Vir

KY940711.1__ARQ95302.1__X__00070

Identity

Accession:
KY940711 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_BDU-MI-1

TaxID: 1983459

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-94
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 49.0 5.27e-01 70.3% 98.7%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.65 47.0 4.09e-01 75.8% 90.0%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 50.0 3.21e-01 90.1% 50.4%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.60 45.0 3.64e-01 80.2% 86.1%
5jmfA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 43.0 3.14e-01 79.1% 96.3%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 3.06e-01 90.1% 45.3%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 46.0 3.21e-01 85.7% 51.2%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 50.0 3.29e-01 96.7% 60.8%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.57 48.0 3.36e-01 93.4% 51.7%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 43.0 2.81e-01 80.2% 27.4%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 47.0 3.06e-01 89.0% 45.4%
4mmhA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 42.0 3.05e-01 80.2% 95.3%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 42.0 3.07e-01 81.3% 97.2%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 48.0 3.23e-01 95.6% 62.9%
4iiqC02 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 41.0 3.37e-01 80.2% 83.1%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 48.0 3.20e-01 95.6% 63.7%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 45.0 3.03e-01 92.3% 62.5%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.55 42.0 3.39e-01 81.3% 57.9%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 3.53e-01 80.2% 54.7%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 41.0 3.12e-01 82.4% 93.4%
3cmbA00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.54 40.0 2.86e-01 79.1% 71.3%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.54e-01 83.5% 83.3%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 39.0 3.18e-01 80.2% 83.9%
6qpwA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.55e-01 87.9% 53.6%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 43.0 3.01e-01 93.4% 74.4%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 3.59e-01 97.8% 65.7%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 39.0 2.76e-01 81.3% 70.3%
7jvhC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 41.0 2.81e-01 89.0% 48.6%
1wuoA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 38.0 2.95e-01 82.4% 95.4%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3706031 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 52.0 3.84e-01 85.7% 57.8%
3782550 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.62 56.0 3.24e-01 100.0% 33.0%
5040847 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 51.0 3.51e-01 90.1% 44.4%
4014908 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.60 41.0 3.44e-01 70.3% 82.5%
4883419 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.60 50.0 3.44e-01 92.3% 67.2%
2549177 5.1.2.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Phage_RBD_prop 0.59 49.0 3.40e-01 89.0% 38.6%
3723546 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 49.0 3.33e-01 90.1% 46.3%
4942549 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 47.0 3.31e-01 86.8% 44.4%
3110491 5.1.3.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.59 51.0 3.35e-01 95.6% 62.2%
3224107 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 48.0 3.09e-01 89.0% 47.5%
4879141 5.1.3.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.58 50.0 3.31e-01 95.6% 61.1%
2672137 5.1.3.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.58 46.0 3.02e-01 85.7% 44.2%
3342566 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 47.0 3.26e-01 89.0% 50.5%
3178555 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 2.99e-01 98.9% 40.8%
2702071 5.1.3.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.57 47.0 3.18e-01 94.5% 61.2%
144144 5.1.3.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.57 49.0 3.22e-01 95.6% 60.7%
3242312 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 46.0 3.25e-01 89.0% 48.3%
1142002 12.3.1.14 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.56 42.0 3.07e-01 80.2% 97.1%
177347 7579.1.1.45 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_7 0.56 43.0 2.85e-01 82.4% 28.1%
4503569 5.1.7.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 0.56 49.0 3.07e-01 100.0% 41.6%
1110926 5.1.3.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.56 49.0 3.27e-01 96.7% 64.7%
5047049 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.56 48.0 2.98e-01 98.9% 69.8%
3729648 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.55 37.0 3.36e-01 70.3% 90.0%
4993051 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.55 47.0 2.96e-01 98.9% 69.2%
3324058 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 42.0 2.84e-01 84.6% 41.3%
3940967 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 42.0 2.96e-01 85.7% 88.5%
4538255 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 43.0 3.00e-01 85.7% 34.3%
3794471 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.53 43.0 2.96e-01 90.1% 63.4%
3789270 5.1.4.115 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CRT10 0.53 44.0 2.64e-01 86.8% 20.6%
4943724 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 45.0 3.10e-01 97.8% 55.4%
5040041 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 39.0 2.91e-01 84.6% 81.9%