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KY940711.1__ARQ95303.1__X__00071

Bact-Vir

KY940711.1__ARQ95303.1__X__00071

Identity

Accession:
KY940711 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_BDU-MI-1

TaxID: 1983459

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-138
PDB
Domain cluster: rep: OR420741.1__WOZ55670.1__CRP118_gp39__00039__D1-140
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05257.23 best CHAP 27.3 5.70e-06 74.3% 67.9%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.78 56.0 5.94e-01 74.3% 97.0%
4eq8A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.74 67.0 5.96e-01 99.1% 88.6%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 38.0 4.66e-01 98.2% 89.2%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 37.0 4.42e-01 98.2% 84.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 36.0 4.70e-01 96.5% 98.4%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 35.0 4.25e-01 98.2% 82.9%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.19e-01 83.2% 74.0%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 34.0 4.33e-01 96.5% 97.1%
6ei1A01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 50.0 3.91e-01 95.6% 81.6%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 4.39e-01 77.9% 92.5%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 36.0 3.84e-01 100.0% 73.0%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 31.0 3.98e-01 96.5% 100.0%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.17e-01 84.1% 83.0%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 39.0 3.78e-01 76.1% 94.4%
4ii1A01 2.30.30.1190 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 4.13e-01 99.1% 98.8%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 44.0 3.94e-01 99.1% 94.8%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 30.0 3.75e-01 90.3% 100.0%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 31.0 3.63e-01 94.7% 88.7%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.50 33.0 3.61e-01 86.7% 81.5%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964422 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.90 85.0 7.41e-01 99.1% 89.4%
3328489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 34.0 4.34e-01 96.5% 74.3%
4999430 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.68 46.0 4.58e-01 74.3% 65.8%
531 4.1.1.281 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KALRN 0.65 38.0 4.66e-01 98.2% 89.2%
3526953 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 36.0 4.79e-01 100.0% 100.0%
184711 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.63 58.0 5.22e-01 100.0% 75.5%
3514906 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 45.0 3.80e-01 86.7% 44.2%
5017073 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 45.0 4.11e-01 74.3% 56.7%
3503815 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 41.0 4.70e-01 77.9% 88.2%
3622055 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 41.0 4.66e-01 77.9% 88.2%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 36.0 4.36e-01 97.3% 88.0%
3710561 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 35.0 4.58e-01 99.1% 100.0%
3561094 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 36.0 4.33e-01 99.1% 88.0%
3257276 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 36.0 3.53e-01 95.6% 53.6%
3408556 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 47.0 4.81e-01 100.0% 84.5%
3434623 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 54.0 4.46e-01 99.1% 95.2%
3911238 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 40.0 4.58e-01 78.8% 89.4%
3393360 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 43.0 4.29e-01 83.2% 71.3%
3230520 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 41.0 4.52e-01 77.9% 86.7%
3408592 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 44.0 4.61e-01 99.1% 87.0%
3607307 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 34.0 4.28e-01 97.3% 92.9%
3642926 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 44.0 3.70e-01 77.9% 91.4%
3514970 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 41.0 4.52e-01 82.3% 91.1%
3389311 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.55e-01 82.3% 88.0%
3774108 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 40.0 4.29e-01 100.0% 86.3%
3171604 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 36.0 4.37e-01 95.6% 96.0%
3342793 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 43.0 3.57e-01 78.8% 75.3%
3245045 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.56 50.0 4.16e-01 99.1% 56.5%
3486271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 4.33e-01 78.8% 90.0%
3829476 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 42.0 3.65e-01 78.8% 93.1%
4518787 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.55 31.0 3.72e-01 85.8% 82.7%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 42.0 4.24e-01 83.2% 79.1%
3333322 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 40.0 3.76e-01 77.0% 88.1%
3658643 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.53 40.0 3.66e-01 77.9% 86.2%
3626694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 37.0 4.05e-01 78.8% 88.9%
3570700 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 40.0 4.05e-01 79.6% 89.6%
3290564 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.51 38.0 4.28e-01 100.0% 98.9%