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KY940711.1__ARQ95315.1__X__00083

Bact-Vir

KY940711.1__ARQ95315.1__X__00083

Identity

Accession:
KY940711 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_BDU-MI-1

TaxID: 1983459

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 65-145
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02637.24 best GatB_Yqey 34.4 2.70e-08 67.9% 32.4%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.69 53.0 5.01e-01 82.7% 73.7%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.69 53.0 5.30e-01 84.0% 81.5%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.69 60.0 5.72e-01 100.0% 84.0%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 47.0 3.67e-01 80.2% 35.1%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.63 47.0 4.76e-01 81.5% 79.3%
1dj2A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.62 45.0 4.29e-01 77.8% 93.9%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.61 48.0 4.47e-01 85.2% 68.9%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.61 46.0 4.62e-01 81.5% 81.5%
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.61 41.0 4.31e-01 71.6% 100.0%
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.61 44.0 4.64e-01 81.5% 87.7%
8thmA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.59 38.0 3.82e-01 100.0% 65.0%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.57 40.0 3.76e-01 75.3% 85.6%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.57 42.0 3.85e-01 80.2% 67.3%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 40.0 4.01e-01 74.1% 88.9%
2efjA01 1.10.1200.270 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Methyltransferase, alpha-helical capping domain 0.57 41.0 3.55e-01 77.8% 81.3%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.56 40.0 3.96e-01 77.8% 78.4%
1u60A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 47.0 3.26e-01 100.0% 65.4%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.54 30.0 3.34e-01 74.1% 67.2%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 41.0 3.19e-01 82.7% 47.1%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 38.0 3.51e-01 75.3% 88.2%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 33.0 3.39e-01 90.1% 66.7%
1l3pA00 1.20.120.320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen 0.53 45.0 4.23e-01 100.0% 86.3%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 39.0 3.29e-01 80.2% 96.6%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.52 39.0 3.52e-01 79.0% 89.1%
3qsgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 45.0 4.06e-01 98.8% 93.0%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.51 38.0 3.54e-01 81.5% 84.1%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.50 37.0 3.57e-01 81.5% 70.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4048642 101.1.1.304 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey 0.95 65.0 7.44e-01 70.4% 90.5%
4946990 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.94 67.0 4.99e-01 72.8% 33.7%
4275639 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.94 64.0 4.78e-01 70.4% 32.6%
4396894 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.94 64.0 4.76e-01 70.4% 32.2%
4676766 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.93 63.0 4.67e-01 70.4% 31.4%
4928013 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.93 63.0 5.01e-01 70.4% 38.3%
4050582 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.93 64.0 4.83e-01 71.6% 33.9%
3744853 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.93 64.0 4.67e-01 71.6% 30.3%
4232722 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.92 69.0 5.05e-01 77.8% 34.0%
4269031 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.91 63.0 4.65e-01 71.6% 31.9%
4064960 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.90 62.0 4.60e-01 70.4% 32.2%
5058390 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.90 62.0 4.71e-01 71.6% 33.9%
4656125 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.90 61.0 4.47e-01 70.4% 30.3%
4596461 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.90 62.0 4.59e-01 71.6% 31.4%
4996012 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.88 67.0 4.94e-01 79.0% 34.2%
4570445 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.88 61.0 4.60e-01 71.6% 32.8%
5052874 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.88 63.0 4.67e-01 74.1% 31.9%
4558241 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.88 60.0 4.45e-01 70.4% 30.5%
4111666 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.88 64.0 4.75e-01 75.3% 33.5%
4528028 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.88 60.0 4.38e-01 70.4% 29.0%
4316606 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.88 61.0 4.57e-01 71.6% 32.8%
4128498 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.88 61.0 4.61e-01 71.6% 33.7%
4956188 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.87 60.0 4.55e-01 74.1% 33.1%
4190614 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.86 59.0 4.53e-01 70.4% 34.3%
4312801 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.86 59.0 4.44e-01 71.6% 32.2%
4530961 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.85 61.0 4.41e-01 75.3% 29.3%
4355585 101.1.1.304 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey 0.85 59.0 6.71e-01 72.8% 96.7%
4137969 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.82 57.0 4.32e-01 71.6% 32.8%
4339648 101.1.2.852 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27213 0.68 61.0 5.80e-01 97.5% 95.8%
3231843 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.67 51.0 5.29e-01 81.5% 89.3%
5048002 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.65 59.0 4.97e-01 100.0% 76.3%
3962849 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.57 49.0 4.47e-01 100.0% 83.5%
5075077 3962.1.1.0 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.57 48.0 3.86e-01 98.8% 60.6%
3993135 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 42.0 3.20e-01 80.2% 77.4%
3752375 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.56 40.0 3.09e-01 77.8% 83.6%
3200422 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 49.0 4.55e-01 100.0% 81.9%
3784532 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 47.0 4.53e-01 98.8% 87.4%
3312027 603.1.1.156 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PGG 0.53 38.0 3.27e-01 75.3% 60.0%
3527488 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.53 38.0 2.97e-01 77.8% 87.4%
3922549 7061.1.1.1 ↗ few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module › C8 0.51 35.0 3.55e-01 79.0% 72.5%
D2 medium residues 1-56
PDB
Domain cluster: rep: OP620778.1__WGN97696.1__X__00282__D9-53