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KY940711.1ARQ95318.1X__00086

Bact-Vir

KY940711.1__ARQ95318.1__X__00086

Identity

Accession:: KY940711 ↗
Kingdom:: phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_BDU-MI-1

TaxID: 1983459

Cluster

View cluster (69 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-31_106-223

PDB

Domain cluster: rep: IMGVR_UViG_3300011969_000001-3300011969-Ga0120166_100003832__D4-174

CATH (55)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3a00A01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.80	49.0	6.18e-01	84.5%	100.0%
1dekA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.77	59.0	6.57e-01	81.8%	99.2%
1zpyA00	6.10.140.1960	Special › Helix non-globular › Helix Hairpins ›	0.72	29.0	3.75e-01	93.2%	63.7%
2bwjA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.72	58.0	5.22e-01	83.8%	95.4%
4nu0A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.71	57.0	5.00e-01	83.1%	100.0%
2grjA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.71	57.0	5.33e-01	83.1%	98.3%
7l4aA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.71	59.0	5.07e-01	86.5%	100.0%
3ephA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.71	59.0	4.70e-01	86.5%	90.6%
1zakA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.70	60.0	5.21e-01	89.9%	98.6%
3hr7B00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.70	55.0	5.42e-01	81.1%	99.4%
3fdiB00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.69	56.0	5.24e-01	84.5%	98.9%
3nwjA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.69	56.0	5.11e-01	85.1%	91.2%
4ttrA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.69	57.0	5.13e-01	87.8%	99.0%
6wctD01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.69	58.0	5.90e-01	93.2%	89.8%
3tauA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.68	56.0	5.93e-01	91.2%	96.2%
3lv8A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.68	57.0	5.07e-01	87.8%	99.0%
3kb2A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.68	57.0	5.39e-01	87.8%	100.0%
1kagA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.68	53.0	5.19e-01	81.1%	98.7%
3ch4B00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.67	60.0	5.51e-01	95.3%	94.1%
4cvnA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.67	54.0	5.05e-01	84.5%	87.2%
1rkbA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.66	56.0	5.33e-01	89.2%	97.7%
2jaqA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.66	53.0	4.87e-01	83.1%	100.0%
1z8fA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.65	50.0	5.50e-01	97.3%	97.5%
3rhfD00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.65	58.0	4.61e-01	93.9%	69.9%
2xtzB01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.64	53.0	4.70e-01	86.5%	99.5%
2hf9B00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.64	52.0	4.61e-01	85.1%	89.5%
1wfdA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.64	30.0	3.83e-01	81.1%	73.1%
5hciC00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.62	52.0	4.34e-01	87.8%	96.3%
1gtvA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.62	49.0	4.39e-01	83.1%	100.0%
1e6cA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.61	57.0	5.46e-01	99.3%	98.8%
1nafA02	1.20.58.160	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	29.0	3.80e-01	100.0%	81.2%
1k90B03	1.20.140.60	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 ›	0.60	30.0	3.37e-01	85.8%	60.9%
2fh5B00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.59	47.0	4.36e-01	83.1%	100.0%
2b4aA00	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.59	44.0	4.95e-01	85.8%	98.3%
5izlA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.59	47.0	4.40e-01	84.5%	98.4%
7bvaA02	3.40.1190.10	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain	0.58	54.0	4.64e-01	100.0%	90.7%
5h7kA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.58	47.0	3.95e-01	85.1%	92.1%
2mt9A00	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.57	47.0	4.52e-01	87.8%	99.4%
3r5xA01	3.40.50.20	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.57	32.0	4.09e-01	82.4%	94.1%
1g7sA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.57	49.0	4.25e-01	92.6%	97.7%
2ov8A01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.56	50.0	4.81e-01	100.0%	83.4%
2yqdA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.56	39.0	4.31e-01	95.3%	87.5%
2mr5A00	3.40.50.11230	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.56	44.0	4.62e-01	84.5%	94.1%
3k2jA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.56	37.0	4.10e-01	92.6%	82.6%
1puiA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.56	50.0	4.75e-01	94.6%	90.5%
3hmfA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.55	38.0	4.24e-01	93.9%	88.8%
4n4gA01	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.55	34.0	3.91e-01	93.9%	82.0%
3bedA00	3.40.50.510	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component	0.55	39.0	4.15e-01	87.2%	82.3%
3d3qA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	49.0	4.85e-01	94.6%	98.7%
3rkvA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	28.0	2.87e-01	82.4%	49.7%
2datA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.54	37.0	4.07e-01	93.9%	85.4%
4d02A02	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.54	42.0	4.34e-01	83.8%	100.0%
2pgnA01	3.40.50.970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains	0.52	45.0	4.14e-01	91.9%	96.3%
2jaxA02	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.52	36.0	3.78e-01	70.9%	99.3%
1yo7A00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	33.0	3.61e-01	88.5%	79.2%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4586475	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.68	29.0	2.63e-01	100.0%	30.3%
3895663	109.4.1.95 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2	0.67	29.0	2.76e-01	100.0%	34.7%
3476359	7526.1.1.1 ↗	a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2	0.66	43.0	4.15e-01	94.6%	58.8%
3878737	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.66	28.0	2.72e-01	100.0%	34.7%
4578566	7526.1.1.1 ↗	a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2	0.66	44.0	5.15e-01	98.0%	95.2%
4312312	7526.1.1.1 ↗	a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2	0.65	44.0	4.73e-01	98.0%	80.0%
4605776	7526.1.1.1 ↗	a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2	0.65	43.0	4.95e-01	98.0%	90.9%
3742811	604.6.1.1 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT	0.61	31.0	3.48e-01	100.0%	62.6%
3329196	604.6.1.1 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT	0.61	30.0	3.63e-01	100.0%	71.0%
3743879	604.6.1.0 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain	0.60	29.0	3.62e-01	100.0%	72.6%
3801859	109.4.1.1242 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_RRP12_N	0.59	33.0	2.78e-01	94.6%	33.5%
4958744	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.58	31.0	3.63e-01	100.0%	71.8%
4559415	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.57	49.0	3.41e-01	91.9%	80.7%
4958743	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.54	30.0	3.45e-01	100.0%	72.2%
3783316	633.1.1.1 ↗	alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain	0.54	40.0	4.12e-01	93.9%	81.4%
4459896	622.4.1.1 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › Blo-t-5	0.53	29.0	3.38e-01	100.0%	72.8%
3683584	7526.1.1.1 ↗	a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2	0.51	45.0	4.66e-01	100.0%	98.6%

D2 high residues 33-94

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1cukA03	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.70	42.0	4.77e-01	83.9%	79.2%
1z19A01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.59	47.0	4.07e-01	90.3%	86.0%
2vzoA03	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.57	45.0	2.88e-01	90.3%	36.9%
4bthA00	1.10.439.10	Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1	0.54	37.0	2.74e-01	82.3%	26.8%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3807848	103.1.1.34 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical	0.73	46.0	4.13e-01	83.9%	47.1%
4442514	103.1.1.6 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C	0.73	44.0	4.84e-01	80.6%	74.0%
4257459	181.1.1.15 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › PF29197	0.61	41.0	4.34e-01	85.5%	78.2%