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KY940711.1__ARQ95344.1__X__00112

Bact-Vir

KY940711.1__ARQ95344.1__X__00112

Identity

Accession:
KY940711 ↗
Kingdom:
phage

Quality

69.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_BDU-MI-1

TaxID: 1983459

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-105
PDB
Domain cluster: rep: MT732475.1__QQV91571.1__Peternella1_35__00035__D6-115
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07030.18 best Phage_Mu_Gp36 73.2 3.40e-20 100.0% 76.6%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jvoA00 1.10.3230.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein 0.72 59.0 6.05e-01 100.0% 90.6%
3t9oB00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.63 44.0 4.14e-01 72.7% 67.5%
1n5uA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.61 42.0 4.38e-01 72.7% 78.9%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.61 47.0 4.32e-01 81.8% 65.6%
2q14B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.59 48.0 3.66e-01 87.9% 76.4%
4r8zA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.59 48.0 3.70e-01 87.9% 67.0%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.58 44.0 4.10e-01 81.8% 65.0%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 42.0 3.78e-01 77.8% 82.9%
3a7kB00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 43.0 3.24e-01 81.8% 40.3%
1tf5A04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.57 42.0 3.48e-01 78.8% 91.2%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 44.0 3.85e-01 81.8% 77.6%
3wctD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 42.0 3.75e-01 82.8% 88.4%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.54 48.0 3.91e-01 100.0% 85.5%
1wvtA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.54 41.0 3.60e-01 81.8% 90.5%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.53 45.0 3.09e-01 99.0% 93.8%
2f07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 39.0 3.21e-01 81.8% 46.9%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.52 45.0 3.97e-01 99.0% 84.4%
3fhdA01 1.20.120.860 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain 0.51 38.0 3.47e-01 79.8% 65.4%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4864447 4275.1.1.2 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_Mu_Gp36 0.91 87.0 8.16e-01 100.0% 86.2%
4884138 4275.1.1.2 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_Mu_Gp36 0.86 80.0 7.53e-01 100.0% 83.1%
3390058 2006.1.1.44 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.64 45.0 3.36e-01 86.9% 30.0%
3781960 2006.1.1.44 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.60 39.0 2.86e-01 87.9% 24.5%
3442088 5059.1.1.3 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.58 45.0 3.54e-01 82.8% 70.7%
4008954 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.56 41.0 4.18e-01 82.8% 79.0%
3413892 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.54 45.0 4.30e-01 100.0% 77.5%
3972311 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.53 41.0 2.98e-01 83.8% 52.0%
4852268 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.53 39.0 3.97e-01 82.8% 81.6%
4597634 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.52 38.0 4.15e-01 84.8% 97.5%
4066835 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.52 40.0 3.77e-01 84.8% 88.8%
2576201 139.2.1.18 ↗ few secondary structure elements › Multiheme cytochromes › Di-heme elbow motif › Di-heme elbow motif › Cytochrom_C552, Cytochrome_C554, Cytochrome_C7 0.52 45.0 3.30e-01 96.0% 59.0%
4524127 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.51 37.0 3.47e-01 96.0% 62.5%
3304870 5059.1.1.24 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › PUNUT 0.50 46.0 3.12e-01 100.0% 84.6%