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KY940711.1__ARQ95375.1__X__00143

Bact-Vir

KY940711.1__ARQ95375.1__X__00143

Identity

Accession:
KY940711 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_BDU-MI-1

TaxID: 1983459

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-77
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 46.0 4.59e-01 96.7% 68.8%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.62 53.0 4.71e-01 96.7% 67.4%
5eo6B00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.61 52.0 3.35e-01 100.0% 68.4%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 43.0 3.74e-01 98.3% 52.5%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.56 49.0 4.60e-01 98.3% 87.8%
3rc3A01 1.10.1740.140 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.56 46.0 4.03e-01 100.0% 75.7%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.55 39.0 3.69e-01 78.3% 60.3%
3ibtA02 1.10.210.20 Mainly Alpha › Orthogonal Bundle › Uteroglobin › 0.55 38.0 3.68e-01 83.3% 63.8%
3c8zA02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.55 42.0 3.84e-01 90.0% 61.4%
3pfyA02 6.10.20.180 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.54 43.0 4.38e-01 96.7% 98.2%
3doeB00 1.20.1520.10 Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain 0.52 38.0 3.08e-01 78.3% 60.5%
1aogB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 2.95e-01 100.0% 93.2%
1li5A02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.52 43.0 3.89e-01 96.7% 67.8%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.51 40.0 3.45e-01 95.0% 70.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3952322 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.89 78.0 6.34e-01 95.0% 76.2%
5040644 101.1.4.93 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre-like-HTH 0.85 73.0 5.60e-01 93.3% 45.4%
3962562 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.84 70.0 5.70e-01 93.3% 51.4%
3088114 101.1.4.14 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH 0.83 74.0 5.79e-01 100.0% 49.2%
4218671 101.1.4.14 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH 0.82 73.0 5.55e-01 98.3% 45.9%
2453093 101.1.4.13 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C 0.82 72.0 5.86e-01 98.3% 53.2%
2409829 101.1.4.14 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH 0.82 71.0 5.31e-01 98.3% 40.9%
4311945 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.80 70.0 5.39e-01 100.0% 44.6%
4116978 101.30.1.1 ↗ alpha arrays › HTH › Rv2175c › Rv2175c › Xre_MbcA_ParS_C 0.79 68.0 6.66e-01 96.7% 90.8%
4555054 101.1.4.14 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH 0.78 65.0 5.28e-01 91.7% 77.3%
5025683 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.77 60.0 6.27e-01 100.0% 92.7%
3279837 101.30.1.4 ↗ alpha arrays › HTH › Rv2175c › Rv2175c › DUF3046 0.77 66.0 6.51e-01 95.0% 92.1%
4251730 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.68 60.0 5.78e-01 100.0% 91.4%
4867504 109.3.1.130 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › TRPM2 0.68 47.0 3.44e-01 71.7% 28.6%
3860658 3009.1.1.0 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.65 49.0 3.89e-01 93.3% 38.5%
3689393 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.57 47.0 3.98e-01 98.3% 52.2%
4929083 6049.1.1.0 ↗ alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.57 48.0 4.52e-01 100.0% 82.7%
4979591 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.54 45.0 4.34e-01 95.0% 85.7%
184691 130.2.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › PF09905 (DUF2132) › PF09905 (DUF2132) › VF530 0.53 45.0 4.12e-01 96.7% 74.4%
3507118 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.52 41.0 2.99e-01 95.0% 56.6%