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KY940711.1__ARQ95390.1__X__00158

Bact-Vir

KY940711.1__ARQ95390.1__X__00158

Identity

Accession:
KY940711 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_BDU-MI-1

TaxID: 1983459

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-81
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 62.0 6.01e-01 100.0% 73.2%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 61.0 6.25e-01 100.0% 83.9%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 61.0 5.70e-01 100.0% 70.0%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 57.0 6.18e-01 95.3% 98.1%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 65.0 5.70e-01 100.0% 66.3%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 5.98e-01 95.3% 100.0%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 59.0 6.07e-01 100.0% 90.3%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 56.0 5.70e-01 100.0% 87.3%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.70 59.0 5.99e-01 100.0% 93.7%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.59e-01 100.0% 88.7%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.69 61.0 4.65e-01 100.0% 66.2%
3mtsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 44.0 4.54e-01 73.4% 67.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 5.88e-01 100.0% 87.5%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 61.0 4.59e-01 100.0% 52.3%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.67 60.0 5.26e-01 100.0% 83.2%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.67 60.0 4.53e-01 100.0% 54.0%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.67 61.0 4.06e-01 100.0% 32.5%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.58e-01 100.0% 84.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 52.0 5.18e-01 100.0% 83.3%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.66 59.0 4.51e-01 100.0% 52.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 5.23e-01 100.0% 88.9%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.65 59.0 5.47e-01 100.0% 88.6%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 4.88e-01 100.0% 65.2%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 4.31e-01 100.0% 41.1%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 4.35e-01 87.5% 92.6%
5w3xD01 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.61 45.0 4.49e-01 79.7% 81.5%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 47.0 4.39e-01 85.9% 93.7%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 41.0 4.25e-01 89.1% 85.7%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 50.0 3.70e-01 100.0% 43.4%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.57 49.0 4.22e-01 100.0% 80.6%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.57 46.0 4.07e-01 95.3% 100.0%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.56 46.0 3.74e-01 95.3% 67.6%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 40.0 4.05e-01 90.6% 78.1%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 47.0 4.02e-01 100.0% 80.7%
3f5rA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.47e-01 87.5% 83.2%
1r9cA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 33.0 2.74e-01 81.2% 32.8%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 67.0 6.49e-01 100.0% 77.1%
2410040 4.1.1.250 ↗ beta barrels › SH3 › SH3 › SH3 › KOW6_SPT5 0.80 61.0 6.30e-01 100.0% 86.7%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 62.0 6.18e-01 100.0% 84.6%
5011394 4.1.3.0 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP 0.76 56.0 5.60e-01 96.9% 76.9%
3999482 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.74 67.0 5.58e-01 100.0% 80.9%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 60.0 5.99e-01 100.0% 86.2%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 57.0 5.76e-01 100.0% 84.6%
3687023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.54e-01 100.0% 84.0%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.93e-01 100.0% 81.1%
3267804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.54e-01 100.0% 88.0%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.72 62.0 5.04e-01 100.0% 52.2%
4026274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 59.0 4.56e-01 100.0% 41.4%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 56.0 5.63e-01 100.0% 84.6%
3927214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 58.0 4.66e-01 100.0% 46.7%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 56.0 5.65e-01 100.0% 86.2%
3599172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 56.0 5.57e-01 100.0% 84.6%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 56.0 5.61e-01 100.0% 86.2%
3590827 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 55.0 5.54e-01 100.0% 84.6%
3959531 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.38e-01 100.0% 78.6%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 55.0 5.53e-01 100.0% 84.6%
4419948 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 55.0 5.50e-01 100.0% 84.6%
5032461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.73e-01 100.0% 90.8%
4446791 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 54.0 5.46e-01 100.0% 84.6%
3471772 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.70 62.0 5.56e-01 100.0% 86.7%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 58.0 5.70e-01 100.0% 84.3%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 54.0 5.42e-01 100.0% 84.6%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.69 61.0 5.31e-01 100.0% 66.3%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 54.0 5.38e-01 100.0% 84.6%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 53.0 5.35e-01 100.0% 84.6%
3234107 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.68 53.0 5.22e-01 100.0% 78.6%
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 61.0 5.56e-01 100.0% 80.0%
3894729 4.1.1.461 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH 0.68 61.0 5.45e-01 100.0% 90.0%
4022153 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.68 61.0 4.66e-01 100.0% 51.0%
3700454 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.01e-01 100.0% 93.0%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 53.0 5.35e-01 100.0% 86.2%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 52.0 5.24e-01 100.0% 84.6%
3575867 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.67 61.0 4.67e-01 100.0% 55.8%
3866907 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 57.0 5.30e-01 100.0% 80.0%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 52.0 5.25e-01 100.0% 86.2%
3023952 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 4.93e-01 100.0% 74.3%
3992087 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.67 60.0 4.36e-01 100.0% 45.9%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 52.0 5.26e-01 100.0% 86.2%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.73e-01 100.0% 91.9%
3770804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.25e-01 100.0% 80.0%
4530545 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.66 58.0 5.14e-01 100.0% 85.3%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 51.0 5.13e-01 100.0% 86.2%
3059317 4.1.1.116 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_14 0.64 55.0 4.68e-01 100.0% 96.4%
3540253 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.64 57.0 5.02e-01 100.0% 68.4%
2410381 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 55.0 5.15e-01 100.0% 82.3%
3907176 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.61 53.0 4.80e-01 100.0% 81.1%
4377781 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 53.0 4.99e-01 100.0% 80.0%
3798523 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 53.0 4.92e-01 98.4% 95.0%
3572649 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.60 53.0 4.92e-01 100.0% 98.8%
3617446 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.59 49.0 4.23e-01 93.8% 64.8%
3727172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.81e-01 100.0% 97.1%
4001056 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.55 44.0 3.94e-01 93.8% 63.0%
5062756 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 40.0 4.42e-01 90.6% 100.0%
4618633 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.54 40.0 4.12e-01 90.6% 89.8%
4968081 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.54 41.0 4.34e-01 93.8% 98.2%
3601811 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 44.0 3.28e-01 100.0% 42.9%
3598686 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 45.0 3.61e-01 100.0% 98.5%