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KY940711.1__ARQ95417.1__X__00185

Bact-Vir

KY940711.1__ARQ95417.1__X__00185

Identity

Accession:
KY940711 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_BDU-MI-1

TaxID: 1983459

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-78
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 4.99e-01 100.0% 79.7%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 5.08e-01 100.0% 94.8%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 5.06e-01 100.0% 91.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 48.0 4.98e-01 100.0% 87.9%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 46.0 4.94e-01 100.0% 93.2%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 47.0 4.92e-01 100.0% 90.9%
3r74B02 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.61 45.0 3.37e-01 79.2% 47.4%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.70e-01 100.0% 89.6%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.54 32.0 3.38e-01 95.8% 66.1%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.68e-01 100.0% 72.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3759402 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.45e-01 100.0% 87.7%
3509345 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 52.0 4.59e-01 98.6% 54.3%
3510029 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 52.0 5.56e-01 98.6% 95.0%
3557677 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 54.0 5.47e-01 100.0% 85.7%
3549369 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 50.0 5.42e-01 98.6% 93.3%
3873942 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.33e-01 100.0% 87.7%
3918340 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 49.0 5.01e-01 100.0% 80.0%
3413864 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 49.0 3.80e-01 100.0% 35.8%
3406792 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.31e-01 91.7% 72.9%
3198759 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 48.0 4.46e-01 100.0% 75.8%
4929001 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 33.0 3.50e-01 84.7% 69.2%
5044837 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 35.0 3.75e-01 88.9% 83.3%
3945427 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.52 37.0 3.61e-01 79.2% 96.5%
4091312 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.51 37.0 3.55e-01 79.2% 97.6%