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KY963371.1__ARW58553.1__X__00044

Bact-Vir

KY963371.1__ARW58553.1__X__00044

Identity

Accession:
KY963371 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Wbetavirus› Bacillus_phage_Carmel_SA

TaxID: 1983578

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-72
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.70 59.0 5.04e-01 100.0% 76.2%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.66 56.0 4.34e-01 96.6% 97.7%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.65 52.0 4.48e-01 93.1% 78.4%
3zypA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 56.0 3.83e-01 100.0% 49.3%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 53.0 4.11e-01 94.8% 95.6%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.64 55.0 3.73e-01 100.0% 28.6%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.63 54.0 4.36e-01 100.0% 92.6%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 40.0 4.53e-01 86.2% 100.0%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 48.0 2.99e-01 86.2% 25.7%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 50.0 4.02e-01 100.0% 45.2%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 3.95e-01 82.8% 81.1%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.59 45.0 3.75e-01 81.0% 70.7%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 47.0 4.16e-01 93.1% 96.6%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.58 49.0 3.91e-01 94.8% 59.8%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.58 48.0 3.85e-01 96.6% 68.0%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 41.0 3.87e-01 77.6% 91.9%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 41.0 2.88e-01 81.0% 21.1%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 50.0 3.15e-01 100.0% 70.3%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.56 43.0 2.83e-01 87.9% 55.1%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.56 41.0 4.19e-01 81.0% 87.0%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 43.0 4.08e-01 87.9% 71.4%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 43.0 3.74e-01 91.4% 82.4%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 44.0 3.73e-01 91.4% 63.8%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 4.40e-01 86.2% 98.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 42.0 4.56e-01 86.2% 100.0%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.55 41.0 3.42e-01 84.5% 54.9%
2z4hA02 2.40.50.540 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain 0.54 44.0 3.95e-01 93.1% 91.9%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.54 44.0 3.69e-01 100.0% 77.8%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 4.08e-01 87.9% 96.9%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.53 39.0 3.12e-01 86.2% 68.5%
2ettA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 36.0 2.91e-01 74.1% 87.5%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.94e-01 84.5% 87.1%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 44.0 4.03e-01 94.8% 80.0%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 2.95e-01 81.0% 56.7%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.64e-01 77.6% 83.6%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.51 38.0 3.58e-01 84.5% 80.3%
1yuaA01 3.30.65.10 Alpha Beta › 2-Layer Sandwich › Bacterial Topoisomerase I; domain 1 › Bacterial Topoisomerase I, domain 1 0.50 39.0 3.89e-01 96.6% 81.2%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 35.0 3.34e-01 75.9% 83.3%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4119222 375.1.1.135 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Lar_restr_allev 0.77 53.0 5.68e-01 74.1% 100.0%
3468148 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.76 60.0 4.15e-01 100.0% 26.2%
3436173 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.74 58.0 3.65e-01 100.0% 16.3%
4982334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 5.42e-01 100.0% 85.5%
5056706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 50.0 5.31e-01 96.6% 88.0%
3296731 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.69 42.0 4.61e-01 81.0% 75.6%
5042619 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.69 59.0 4.18e-01 100.0% 46.3%
4966534 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 49.0 5.18e-01 96.6% 88.0%
5023740 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.20e-01 96.6% 88.0%
4938404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 4.93e-01 100.0% 81.8%
5047657 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 49.0 4.97e-01 82.8% 96.4%
5015133 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.65 42.0 4.24e-01 74.1% 65.0%
4425056 64.1.1.4 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_1 0.65 38.0 4.37e-01 82.8% 94.3%
4930179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.12e-01 100.0% 89.1%
3273079 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.64 53.0 4.64e-01 94.8% 92.1%
5002449 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.78e-01 100.0% 83.6%
4932814 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 38.0 4.53e-01 74.1% 100.0%
3479475 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 52.0 3.49e-01 96.6% 40.3%
4957409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.67e-01 98.3% 88.0%
3786392 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 54.0 3.36e-01 100.0% 79.7%
4935681 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.68e-01 96.6% 85.5%
4969162 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.59 42.0 4.20e-01 77.6% 73.3%
223929 3618.1.1.2 ↗ beta complex topology › Flagellin beta sheet domain › Flagellin beta sheet domain › Flagellin beta sheet domain › FliC-like_3rd 0.59 39.0 3.72e-01 82.8% 58.2%
5020790 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.59 46.0 4.71e-01 89.7% 100.0%
4963351 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.72e-01 89.7% 65.8%
3995797 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.58 42.0 4.11e-01 79.3% 89.2%
5079258 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.58 40.0 4.24e-01 77.6% 93.3%
3820070 5.1.2.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › FBA_1 0.58 50.0 3.44e-01 100.0% 83.6%
3609692 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 51.0 3.05e-01 100.0% 47.8%
3166720 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 2.92e-01 100.0% 41.3%
5004736 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 38.0 3.83e-01 86.2% 69.0%
3212404 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.57 47.0 3.19e-01 100.0% 23.5%
3260099 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 3.79e-01 84.5% 88.9%
5057503 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.56 43.0 4.34e-01 84.5% 100.0%
2322892 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.55 41.0 2.72e-01 84.5% 91.5%
3640668 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.54 41.0 3.34e-01 86.2% 81.6%
3385864 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.54 37.0 3.73e-01 74.1% 85.0%
3383213 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 42.0 2.83e-01 100.0% 83.3%
5020098 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.53 36.0 3.46e-01 72.4% 70.0%
4883194 601.52.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain 0.53 41.0 2.74e-01 87.9% 25.1%
3483955 386.1.1.6 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.53 42.0 3.77e-01 91.4% 62.4%
4478612 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 36.0 2.89e-01 72.4% 35.0%
3587925 220.1.1.242 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EbsA 0.52 40.0 3.80e-01 94.8% 70.7%
4057742 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.52 37.0 3.66e-01 79.3% 93.8%
3385764 4954.1.1.0 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.51 37.0 3.47e-01 81.0% 92.0%
5043054 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 3.22e-01 82.8% 81.0%
4330011 570.1.1.1 ↗ alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind 0.50 37.0 2.63e-01 79.3% 29.1%