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KY963424.1__ASD50195.1__SSP1_023__00022

Bact-Vir

KY963424.1__ASD50195.1__SSP1_023__00022

Identity

Accession:
KY963424 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Tequintavirus› Shigella_phage_SSP1

TaxID: 1983588

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-63
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11031.14 best Phage_holin_T 88.8 5.30e-25 100.0% 21.5%
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lrzE01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.68 54.0 3.75e-01 100.0% 25.3%
3r4kA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 56.0 3.87e-01 100.0% 27.4%
3citA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 52.0 3.69e-01 100.0% 28.4%
3hcyA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 51.0 3.73e-01 100.0% 30.3%
5y6iA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.65 55.0 3.89e-01 100.0% 30.4%
2ot9A01 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.65 50.0 3.50e-01 100.0% 25.0%
7jsnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 51.0 3.45e-01 100.0% 22.3%
5hpfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 54.0 3.73e-01 100.0% 28.0%
1f5mA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 50.0 3.47e-01 100.0% 25.6%
2k31A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 49.0 3.60e-01 100.0% 30.9%
3mq0B02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 50.0 3.58e-01 100.0% 27.9%
3eeaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 48.0 3.50e-01 100.0% 29.4%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 39.0 3.35e-01 100.0% 37.9%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 45.0 4.26e-01 95.9% 68.2%
4r70B01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 45.0 3.09e-01 100.0% 21.7%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 43.0 3.53e-01 100.0% 41.2%
3emiA00 3.90.1780.10 Alpha Beta › Alpha-Beta Complex › Trimeric adhesin › Trimeric adhesin 0.59 36.0 2.81e-01 89.8% 26.4%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 51.0 3.67e-01 100.0% 35.6%
3cxjA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 47.0 3.57e-01 100.0% 60.4%
2ex2A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 46.0 3.08e-01 100.0% 21.6%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 50.0 3.42e-01 100.0% 33.2%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.57 46.0 4.11e-01 100.0% 89.9%
1dmgA00 3.40.1370.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L4; Chain: A; › Ribosomal protein L4/L1 0.57 46.0 3.26e-01 95.9% 93.0%
1mkmA03 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 46.0 3.30e-01 100.0% 28.5%
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 44.0 3.18e-01 100.0% 27.5%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 42.0 3.43e-01 95.9% 41.9%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 38.0 3.61e-01 91.8% 58.5%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 43.0 3.21e-01 100.0% 88.9%
6kryA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 46.0 3.42e-01 100.0% 78.3%
2dr1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 42.0 3.27e-01 95.9% 50.4%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 41.0 2.53e-01 100.0% 11.5%
4dmzB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 41.0 3.15e-01 100.0% 32.4%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.54 45.0 3.88e-01 100.0% 81.0%
4tz7A02 3.30.810.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase Iibeta; Chain: A, domain 2 › 2-Layer Sandwich 0.54 41.0 3.07e-01 85.7% 64.7%
2kc5A01 3.30.1460.40 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE 0.54 41.0 3.20e-01 95.9% 56.6%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 42.0 3.13e-01 100.0% 29.9%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 41.0 3.57e-01 100.0% 52.0%
2efxF00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 38.0 2.49e-01 100.0% 14.2%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 42.0 3.31e-01 98.0% 65.1%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 41.0 3.09e-01 100.0% 33.3%
4hpqB00 2.60.270.60 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Autophagy-related protein 31 0.51 41.0 3.32e-01 100.0% 69.6%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 38.0 3.56e-01 87.8% 92.8%
4lqeA00 3.40.1350.140 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › MepB-like 0.51 42.0 3.08e-01 98.0% 36.2%
2wnyA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.51 37.0 2.80e-01 79.6% 51.8%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.50 41.0 3.34e-01 100.0% 45.9%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 40.0 2.71e-01 100.0% 87.8%
3fwyA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 43.0 2.76e-01 100.0% 88.1%
3abzA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 41.0 2.96e-01 100.0% 58.2%
3qa8G02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 33.0 2.89e-01 89.8% 40.5%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972495 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.70 53.0 3.63e-01 100.0% 23.4%
5048404 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.70 55.0 3.87e-01 100.0% 26.5%
3286427 223.1.1.104 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF26965 0.68 55.0 3.63e-01 100.0% 21.4%
1732313 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.68 55.0 3.85e-01 100.0% 28.0%
140945 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.67 53.0 3.72e-01 100.0% 25.3%
3274454 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.66 54.0 3.04e-01 100.0% 8.0%
3970434 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.66 52.0 3.83e-01 100.0% 31.0%
140193 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.66 52.0 3.86e-01 100.0% 31.7%
4009068 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.66 51.0 3.65e-01 100.0% 26.5%
4945266 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 52.0 3.86e-01 100.0% 32.6%
4961540 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.65 56.0 3.83e-01 100.0% 27.9%
1826987 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.65 51.0 3.55e-01 100.0% 25.1%
4010024 223.1.1.160 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF31091 0.65 51.0 3.95e-01 100.0% 36.7%
3238287 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.65 51.0 3.24e-01 100.0% 16.6%
4961612 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.65 54.0 3.72e-01 100.0% 25.1%
4958964 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.64 51.0 3.55e-01 100.0% 25.7%
4551342 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 49.0 4.12e-01 85.7% 51.8%
4008377 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 50.0 3.99e-01 100.0% 40.9%
3948072 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.63 52.0 3.64e-01 100.0% 26.5%
4989233 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.63 49.0 3.67e-01 100.0% 32.1%
3279653 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.63 50.0 3.49e-01 100.0% 24.9%
5045065 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.63 49.0 3.36e-01 100.0% 23.1%
4988348 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.62 50.0 3.11e-01 100.0% 14.8%
3288809 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.62 51.0 3.62e-01 100.0% 28.0%
4962164 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.62 51.0 3.59e-01 100.0% 26.3%
4488170 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.61 51.0 3.58e-01 100.0% 27.5%
4185758 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.61 51.0 3.56e-01 100.0% 27.8%
3226306 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 47.0 3.70e-01 100.0% 38.3%
2140754 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.60 50.0 3.75e-01 100.0% 36.0%
3853362 243.3.1.2 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cathelicidins 0.59 45.0 3.51e-01 100.0% 36.5%
1697856 4963.1.1.3 ↗ alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › CPV_RdRP_N 0.59 44.0 2.71e-01 83.7% 31.1%
5050183 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 47.0 3.74e-01 98.0% 51.3%
4962089 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.58 47.0 3.35e-01 100.0% 27.2%
3602004 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 47.0 3.82e-01 100.0% 97.1%
4311623 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.57 45.0 3.49e-01 98.0% 60.7%
3993195 859.1.1.0 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.56 46.0 3.53e-01 100.0% 93.1%
3707909 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 45.0 3.84e-01 100.0% 92.2%
3931143 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.54 38.0 2.96e-01 100.0% 30.4%
3832573 221.1.1.235 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Zn_SUZ12 0.54 44.0 4.07e-01 100.0% 100.0%
2154862 2498.1.1.23 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.54 43.0 2.45e-01 100.0% 37.4%
3343216 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.54 42.0 3.28e-01 100.0% 37.5%
2138587 2498.1.1.23 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.53 41.0 2.38e-01 100.0% 39.4%
3302022 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 43.0 3.57e-01 100.0% 90.0%
4492767 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 43.0 3.76e-01 100.0% 91.8%
3446878 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 40.0 3.48e-01 93.9% 93.7%
3513438 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 36.0 3.00e-01 71.4% 41.1%
3652038 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 42.0 3.70e-01 100.0% 96.5%
3333290 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.53 43.0 2.92e-01 91.8% 59.4%
3799664 2485.1.1.60 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › 1-cysPrx_C 0.52 37.0 2.88e-01 100.0% 30.4%
3674397 2485.1.1.82 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ATP-synt_10 0.52 36.0 3.06e-01 93.9% 38.9%
4280109 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.51 41.0 3.25e-01 100.0% 63.2%
3254341 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.51 39.0 2.65e-01 100.0% 18.5%
3605971 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 40.0 3.24e-01 95.9% 63.6%
3422969 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.50 41.0 3.24e-01 100.0% 77.3%
4996799 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.50 36.0 3.21e-01 100.0% 49.4%
5066674 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.50 36.0 2.95e-01 100.0% 35.7%