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KY971610.1__ASD52119.1__PspYZU05_167__00167

Bact-Vir

KY971610.1__ASD52119.1__PspYZU05_167__00167

Identity

Accession:
KY971610 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Jiangsuvirus› Pseudomonas_phage_PspYZU05

TaxID: 1983556

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-83
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24205.2 best Antiholin 89.1 1.80e-25 100.0% 61.5%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.80 71.0 6.33e-01 100.0% 81.6%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.79 70.0 6.18e-01 100.0% 79.5%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.79 70.0 6.12e-01 100.0% 81.3%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 49.0 4.02e-01 72.1% 62.3%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.13e-01 72.1% 66.7%
2pftA00 1.20.1280.170 Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 0.65 44.0 2.58e-01 70.5% 9.2%
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.61 42.0 2.91e-01 70.5% 22.8%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 43.0 4.19e-01 93.4% 67.6%
3a4lB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 43.0 3.17e-01 77.0% 41.6%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 36.0 3.54e-01 72.1% 54.4%
1kl9A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.59 49.0 4.43e-01 100.0% 87.0%
1f81A00 1.20.1020.10 Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain 0.59 40.0 3.54e-01 70.5% 70.1%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.57 46.0 4.70e-01 95.1% 94.9%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.56 38.0 3.25e-01 70.5% 97.0%
3fnrA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 43.0 2.81e-01 86.9% 21.7%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 39.0 3.85e-01 73.8% 66.2%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.56 38.0 3.71e-01 75.4% 65.8%
3e0zA00 1.20.58.1400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Domain of unknown function DUF3837 0.54 47.0 3.85e-01 93.4% 74.8%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 42.0 3.46e-01 86.9% 76.4%
2ijrA02 1.10.3530.10 Mainly Alpha › Orthogonal Bundle › Api92-like › Api92-like 0.51 41.0 3.02e-01 91.8% 87.7%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.47e-01 72.1% 70.8%
3nb0B02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 44.0 3.00e-01 100.0% 57.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3301750 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 51.0 4.32e-01 72.1% 43.8%
4952935 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.73 64.0 6.28e-01 98.4% 92.3%
3491856 142.1.1.22 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C 0.71 62.0 5.40e-01 100.0% 80.0%
3808410 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.71 62.0 6.10e-01 100.0% 96.9%
3467442 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 48.0 4.08e-01 70.5% 45.0%
5070580 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.70 57.0 5.83e-01 100.0% 98.3%
4589278 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.69 58.0 4.99e-01 100.0% 100.0%
3372833 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 51.0 5.33e-01 90.2% 94.5%
4972578 109.23.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 0.68 46.0 3.93e-01 70.5% 45.5%
2819444 3877.1.1.1 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.67 50.0 3.61e-01 83.6% 30.6%
3479812 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 44.0 3.85e-01 70.5% 49.5%
3327190 632.2.1.25 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › At2g29880_C 0.65 52.0 5.25e-01 98.4% 90.0%
3465214 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.65 56.0 5.18e-01 100.0% 86.3%
3962057 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.64 45.0 4.15e-01 73.8% 69.6%
3396456 592.2.1.2 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.63 54.0 4.46e-01 96.7% 100.0%
3577233 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.62 43.0 4.14e-01 72.1% 78.6%
3329713 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.61 48.0 4.71e-01 91.8% 81.5%
3595202 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 44.0 3.15e-01 88.5% 23.6%
4011264 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 41.0 3.16e-01 72.1% 32.9%
4983683 604.12.1.140 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF447_C 0.57 41.0 4.04e-01 73.8% 81.5%
1712010 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 36.0 3.84e-01 70.5% 71.7%
4600309 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.57 45.0 3.89e-01 90.2% 95.0%
3184710 1134.1.1.7 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.56 39.0 3.76e-01 73.8% 62.9%
3475698 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.56 41.0 3.12e-01 78.7% 35.3%
4990861 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.55 46.0 2.72e-01 100.0% 79.8%
3968817 3831.1.1.1 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI 0.55 44.0 4.10e-01 98.4% 82.4%
3740089 1134.1.1.7 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.55 39.0 3.83e-01 73.8% 67.7%
3597591 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.55 44.0 4.32e-01 93.4% 88.6%
3654606 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.55 45.0 4.32e-01 96.7% 84.0%
2979253 632.21.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › EndoS_helical 0.54 43.0 4.16e-01 86.9% 82.9%
3922669 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 44.0 3.72e-01 98.4% 73.3%
3990094 5086.1.1.94 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HB_LcnD 0.51 39.0 2.88e-01 83.6% 95.3%
3629131 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 2.78e-01 95.1% 34.3%
3603132 633.12.1.0 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.50 44.0 4.01e-01 96.7% 76.2%