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KY971610.1__ASD52125.1__PspYZU05_173__00173
Bact-VirKY971610.1__ASD52125.1__PspYZU05_173__00173
Identity
- Accession:
- KY971610 ↗
- Kingdom:
- phage
Quality
81.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Jiangsuvirus›
Pseudomonas_phage_PspYZU05
TaxID: 1983556
Cluster
View cluster (17 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-116
Domain cluster:
rep: KX822733.1__APC44357.1__X__00090__D1-80
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26835.1 best | Phage_T4_Y04K | 60.3 | 2.80e-16 | 78.1% | 62.8% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.71 | 33.0 | 4.39e-01 | 86.8% | 83.3% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.70 | 30.0 | 4.05e-01 | 79.8% | 76.7% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.69 | 31.0 | 4.15e-01 | 76.3% | 77.8% |
| 4xmeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.65 | 40.0 | 3.37e-01 | 90.4% | 37.0% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.62 | 31.0 | 4.09e-01 | 86.0% | 89.8% |
| 2owpA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 43.0 | 4.14e-01 | 71.1% | 62.8% |
| 3bb9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 43.0 | 4.19e-01 | 71.9% | 68.8% |
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.61 | 42.0 | 4.43e-01 | 71.1% | 96.2% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.59 | 45.0 | 4.14e-01 | 78.9% | 63.9% |
| 2gr7A00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.57 | 33.0 | 3.54e-01 | 74.6% | 65.3% |
| 1tp6A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 38.0 | 3.76e-01 | 71.1% | 66.7% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.56 | 41.0 | 3.76e-01 | 77.2% | 65.3% |
| 4bg7A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.55 | 33.0 | 3.56e-01 | 73.7% | 68.4% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.55 | 40.0 | 3.78e-01 | 76.3% | 80.7% |
| 2fpnA01 | 3.30.2030.10 | Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like | 0.55 | 38.0 | 3.60e-01 | 77.2% | 58.6% |
| 3bgaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 40.0 | 3.07e-01 | 77.2% | 99.3% |
| 3g0kA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 42.0 | 4.12e-01 | 89.5% | 75.0% |
| 3ec9A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 45.0 | 4.31e-01 | 89.5% | 84.5% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.53 | 37.0 | 3.60e-01 | 70.2% | 73.2% |
| 4orlA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 42.0 | 4.36e-01 | 89.5% | 87.3% |
| 1fuwA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 4.09e-01 | 89.5% | 91.2% |
| 3b7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 3.68e-01 | 72.8% | 69.2% |
| 3g8zA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 42.0 | 4.12e-01 | 89.5% | 84.4% |
| 1t17A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 37.0 | 3.48e-01 | 76.3% | 76.4% |
| 2kxgA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 36.0 | 3.90e-01 | 89.5% | 86.3% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.51 | 39.0 | 3.03e-01 | 79.8% | 39.8% |
| 2oq8A00 | 2.60.40.2930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.40e-01 | 90.4% | 58.0% |
| 1buqA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 4.13e-01 | 89.5% | 83.2% |
| 3dmcA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 42.0 | 4.01e-01 | 90.4% | 81.3% |
| 2xn1A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.50 | 43.0 | 3.18e-01 | 94.7% | 96.1% |
| 4jf6A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 43.0 | 3.43e-01 | 95.6% | 66.9% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4028906 | 1116.1.1.0 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain | 0.72 | 52.0 | 4.36e-01 | 74.6% | 98.4% |
| 2772183 | 1116.1.1.1 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin_dom | 0.70 | 52.0 | 4.09e-01 | 77.2% | 92.9% |
| 1916722 | 1116.1.1.1 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin_dom | 0.69 | 50.0 | 4.03e-01 | 74.6% | 99.5% |
| None | — | 0.68 | 48.0 | 2.92e-01 | 72.8% | 31.5% | |
| 3717095 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.68 | 48.0 | 2.91e-01 | 72.8% | 31.5% |
| 3854276 | 1116.1.1.1 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin_dom | 0.67 | 50.0 | 3.99e-01 | 78.1% | 100.0% |
| 5018718 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 36.0 | 4.71e-01 | 78.1% | 93.8% |
| 2362 | 71.2.1.1 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind | 0.65 | 36.0 | 3.07e-01 | 79.8% | 33.3% |
| 3169357 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.64 | 43.0 | 4.43e-01 | 76.3% | 70.9% |
| 3496817 | 3369.1.1.1 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal | 0.64 | 38.0 | 3.45e-01 | 75.4% | 41.9% |
| 4204465 | 881.1.1.36 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF25844 | 0.64 | 45.0 | 4.28e-01 | 73.7% | 66.7% |
| 3436853 | 5.1.3.54 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 | 0.62 | 43.0 | 3.00e-01 | 70.2% | 87.2% |
| 3250658 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.61 | 44.0 | 3.44e-01 | 75.4% | 75.5% |
| 3596331 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.61 | 42.0 | 4.08e-01 | 72.8% | 64.1% |
| 3736626 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.59 | 42.0 | 4.02e-01 | 90.4% | 63.8% |
| 3303563 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.59 | 44.0 | 3.89e-01 | 77.2% | 65.0% |
| 5034702 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.59 | 43.0 | 3.94e-01 | 76.3% | 63.1% |
| 3966459 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.58 | 44.0 | 4.11e-01 | 78.9% | 65.7% |
| 4806775 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.58 | 39.0 | 3.92e-01 | 71.1% | 67.2% |
| 4941093 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.58 | 43.0 | 3.94e-01 | 78.1% | 65.3% |
| 3820010 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.58 | 43.0 | 3.85e-01 | 77.2% | 62.5% |
| 3825682 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.57 | 39.0 | 4.21e-01 | 89.5% | 81.8% |
| 3377988 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 39.0 | 4.19e-01 | 89.5% | 81.0% |
| 2410020 | 881.1.1.4 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DcrB | 0.57 | 42.0 | 3.85e-01 | 77.2% | 64.2% |
| 3281686 | 331.3.1.27 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 | 0.56 | 41.0 | 3.65e-01 | 76.3% | 78.2% |
| 4941591 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 41.0 | 3.83e-01 | 77.2% | 65.5% |
| 3824321 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 39.0 | 4.29e-01 | 90.4% | 90.0% |
| 3281179 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.56 | 39.0 | 3.76e-01 | 72.8% | 68.1% |
| 6385 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.56 | 38.0 | 3.76e-01 | 71.1% | 66.7% |
| 5038083 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.56 | 43.0 | 4.27e-01 | 96.5% | 76.6% |
| 4928436 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.55 | 40.0 | 3.75e-01 | 76.3% | 66.9% |
| 3177232 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.55 | 44.0 | 4.39e-01 | 97.4% | 83.5% |
| 4965247 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.55 | 39.0 | 3.79e-01 | 72.8% | 80.0% |
| 3363098 | 295.1.1.5 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Whirly | 0.54 | 35.0 | 3.70e-01 | 90.4% | 71.4% |
| 4974235 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 39.0 | 3.48e-01 | 76.3% | 60.6% |
| 3481572 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.52 | 37.0 | 2.76e-01 | 93.9% | 29.3% |
| 3781730 | 5.1.11.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Utp8_b_propeller | 0.52 | 46.0 | 3.14e-01 | 93.9% | 29.2% |
| 3961612 | 881.1.1.8 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C | 0.51 | 44.0 | 3.64e-01 | 93.0% | 69.1% |
| 3989344 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.51 | 41.0 | 4.03e-01 | 90.4% | 78.4% |
| 3567279 | 243.3.1.4 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Latexin_N | 0.51 | 39.0 | 3.91e-01 | 93.9% | 79.1% |
| 150490 | 3123.1.1.1 ↗ | a+b two layers › Nuclease AFV1-157 › Nuclease AFV1-157 › Nuclease AFV1-157 › DUF3258 | 0.51 | 37.0 | 3.38e-01 | 90.4% | 56.9% |
| 1406770 | 868.1.1.2 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase | 0.51 | 37.0 | 2.88e-01 | 76.3% | 77.0% |
| 3376439 | 5.1.4.276 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_2nd | 0.51 | 43.0 | 2.94e-01 | 90.4% | 30.1% |
| 4139532 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.50 | 37.0 | 3.50e-01 | 76.3% | 65.9% |
| 6374 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.50 | 42.0 | 4.09e-01 | 90.4% | 83.2% |