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KY979109.1__ASJ79416.1__SHP1_094__00094
Bact-VirKY979109.1__ASJ79416.1__SHP1_094__00094
Identity
- Accession:
- KY979109 ↗
- Kingdom:
- phage
Quality
81.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Dhakavirus›
Salmonella_phage_SHP1
TaxID: 2015808
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-53
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23830.2 best | DUF7200 | 59.3 | 5.70e-16 | 100.0% | 59.1% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6do0A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 47.0 | 3.85e-01 | 71.2% | 52.0% |
| 4jixB00 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.65 | 40.0 | 3.19e-01 | 71.2% | 29.8% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 54.0 | 4.78e-01 | 92.3% | 67.1% |
| 1yt3A03 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.62 | 54.0 | 4.68e-01 | 100.0% | 68.3% |
| 1qd1B02 | 3.30.70.670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain | 0.61 | 47.0 | 3.43e-01 | 92.3% | 30.3% |
| 4w78F00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 45.0 | 3.40e-01 | 92.3% | 54.3% |
| 1td6A03 | 1.10.472.40 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 | 0.53 | 43.0 | 3.66e-01 | 90.4% | 88.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3517611 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.80 | 67.0 | 4.32e-01 | 92.3% | 21.3% |
| 3225309 | 206.1.1.88 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL, DUF1679 | 0.67 | 54.0 | 3.31e-01 | 100.0% | 13.6% |
| 5039798 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.66 | 46.0 | 3.74e-01 | 73.1% | 64.0% |
| 3167929 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.63 | 47.0 | 4.23e-01 | 78.8% | 67.1% |
| 4029706 | 109.4.1.111 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUL | 0.54 | 45.0 | 2.88e-01 | 100.0% | 31.7% |