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KY979132.2__ASD50434.1__X__00153

Bact-Vir

KY979132.2__ASD50434.1__X__00153

Identity

Accession:
KY979132 ↗
Kingdom:
phage

Quality

50.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Busanvirus› Acidovorax_phage_ACP17

TaxID: 2010329

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 212-270
PDB
Domain cluster: rep: NC_048080.1__YP_009813991.1__HOU35_gp040__00137__D2-71
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.70 43.0 3.94e-01 100.0% 47.4%
2xi9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 42.0 3.42e-01 100.0% 32.7%
1mgpA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 43.0 3.22e-01 100.0% 27.1%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.62 38.0 3.94e-01 100.0% 64.9%
5t17A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.61 39.0 3.53e-01 100.0% 44.7%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 43.0 3.95e-01 100.0% 55.7%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.78e-01 100.0% 54.0%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 3.75e-01 100.0% 56.2%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.78e-01 100.0% 51.0%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 35.0 2.98e-01 100.0% 33.7%
2xg5B01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.57 36.0 2.77e-01 100.0% 27.2%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 45.0 3.91e-01 100.0% 55.2%
2gy5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 3.67e-01 100.0% 50.5%
3vzbB02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 47.0 3.33e-01 100.0% 97.4%
2kqaA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.55 42.0 3.47e-01 100.0% 43.3%
3h8hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 36.0 3.19e-01 98.3% 43.5%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 36.0 3.13e-01 100.0% 41.8%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.54 33.0 3.24e-01 100.0% 54.5%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.81e-01 100.0% 71.2%
1g25A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 38.0 3.73e-01 100.0% 70.8%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 47.0 4.41e-01 100.0% 80.6%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.53 42.0 3.30e-01 91.5% 82.9%
2v7kA02 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 43.0 3.04e-01 96.6% 74.3%
3etbL00 2.60.40.810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.44e-01 100.0% 46.9%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 45.0 4.58e-01 98.3% 100.0%
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 32.0 2.89e-01 100.0% 39.8%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 41.0 3.28e-01 100.0% 40.9%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 44.0 4.35e-01 98.3% 89.1%
1ji6A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 3.15e-01 100.0% 34.6%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.51 41.0 3.65e-01 96.6% 69.1%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.61e-01 100.0% 58.0%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 44.0 3.20e-01 100.0% 39.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4950591 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.64 39.0 3.04e-01 100.0% 26.9%
3725555 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.64 38.0 2.65e-01 100.0% 17.9%
3668540 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.62 53.0 3.92e-01 100.0% 98.8%
153859 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.62 38.0 3.94e-01 100.0% 64.9%
4954389 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 43.0 3.19e-01 100.0% 29.3%
3193939 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.61 37.0 2.71e-01 100.0% 21.3%
3333626 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.61 40.0 4.00e-01 100.0% 66.7%
5050775 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.61 41.0 3.38e-01 100.0% 38.2%
3877348 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.59 41.0 3.17e-01 98.3% 31.9%
3991763 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.59 39.0 4.42e-01 96.6% 100.0%
3603304 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.57 47.0 4.90e-01 98.3% 98.2%
3925553 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 3.81e-01 100.0% 61.5%
3231131 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 48.0 3.99e-01 100.0% 55.2%
3630069 223.1.1.101 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 0.53 38.0 2.24e-01 78.0% 14.4%
1030895 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.53 46.0 4.39e-01 98.3% 83.8%
165083 4229.1.1.3 ↗ alpha bundles › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › PrnB 0.53 44.0 2.97e-01 96.6% 66.3%
3283253 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.51 45.0 3.11e-01 100.0% 71.2%
167127 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.51 43.0 4.44e-01 96.6% 100.0%
4013442 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.51 41.0 3.69e-01 98.3% 63.5%
4363284 148.1.3.203 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.50 43.0 3.31e-01 98.3% 70.7%
3621967 301.7.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.50 33.0 2.95e-01 89.8% 43.2%
D2 medium residues 58-197
PDB