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KY979132.2__ASD50467.1__X__00185

Bact-Vir

KY979132.2__ASD50467.1__X__00185

Identity

Accession:
KY979132 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Busanvirus› Acidovorax_phage_ACP17

TaxID: 2010329

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-70
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.58 42.0 2.70e-01 80.0% 16.0%
1b12A02 2.170.230.10 Mainly Beta › Beta Complex › Signal Peptidase I; Chain: A, domain 2 › 0.54 29.0 2.91e-01 81.4% 48.6%
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.52 32.0 2.79e-01 70.0% 39.6%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3928472 376.1.1.95 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RH_dom 0.56 29.0 3.02e-01 80.0% 50.8%
3951192 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.55 37.0 2.32e-01 71.4% 46.5%
4445936 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.54 42.0 3.37e-01 88.6% 72.7%
3685726 109.22.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Survival of motor neuron protein-interacting protein 1 › Survival of motor neuron protein-interacting protein 1 › SIP1 0.52 34.0 2.37e-01 91.4% 17.7%
3629246 60.1.2.2 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.52 41.0 2.73e-01 88.6% 43.2%
3797433 60.1.2.0 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain 0.51 40.0 2.70e-01 88.6% 43.9%
4162129 60.1.2.2 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.51 40.0 2.75e-01 88.6% 44.5%
3346071 207.1.1.102 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.51 43.0 2.60e-01 100.0% 40.5%
3601554 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.51 37.0 2.79e-01 77.1% 82.6%
3511720 60.1.2.2 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.50 39.0 2.68e-01 88.6% 44.5%
D2 medium residues 142-197
PDB
Domain cluster: rep: BML_coassembly_scaffold_41_prodigal-single.1__X__X__00159__D975-1030
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4j3cA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.67 47.0 4.55e-01 75.0% 93.8%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 47.0 4.08e-01 87.5% 86.0%
2q6iA02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.63 44.0 3.62e-01 87.5% 39.8%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.18e-01 71.4% 73.3%
1qyaB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.61 44.0 3.29e-01 76.8% 45.8%
6twjA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.57 46.0 3.08e-01 89.3% 25.6%
5wt7A00 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.56 40.0 3.14e-01 80.4% 38.6%
3ju4A01 3.30.750.60 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › Endosialidase, N-terminal extension domain 0.56 41.0 3.83e-01 80.4% 90.3%
1cwvA05 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.56 40.0 3.47e-01 82.1% 74.0%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.55 42.0 3.49e-01 83.9% 46.1%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 41.0 2.98e-01 89.3% 50.8%
2dp9A01 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.54 38.0 3.28e-01 78.6% 91.0%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.53 41.0 3.27e-01 85.7% 47.1%
1zj8A03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.52 39.0 3.01e-01 91.1% 80.6%
4btfA03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 2.95e-01 73.2% 79.5%
2rlpA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.52 37.0 3.54e-01 75.0% 64.2%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 35.0 3.34e-01 71.4% 78.8%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.26e-01 89.3% 82.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3166885 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 53.0 3.24e-01 89.3% 45.8%
4051888 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 48.0 4.41e-01 80.4% 95.9%
3512462 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.61 48.0 3.94e-01 92.9% 84.2%
3238508 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.60 42.0 3.97e-01 75.0% 90.0%
4430204 1.1.9.15 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › Methyltranf_PUA 0.58 42.0 3.77e-01 78.6% 82.5%
4139986 12.6.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_95_C 0.54 39.0 3.62e-01 78.6% 100.0%
178 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.53 39.0 3.19e-01 83.9% 79.2%
3173175 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.53 38.0 3.03e-01 80.4% 47.8%