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KY979132.2__ASD50473.1__X__00191

Bact-Vir

KY979132.2__ASD50473.1__X__00191

Identity

Accession:
KY979132 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.64 43.0 3.89e-01 86.9% 50.6%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 43.0 4.09e-01 90.2% 60.0%
2oyoA02 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.58 50.0 3.99e-01 98.4% 76.0%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 49.0 4.86e-01 100.0% 100.0%
3djaA01 1.20.920.70 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.55 43.0 3.34e-01 91.8% 36.6%
2lpbA00 1.10.287.2920 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 46.0 4.23e-01 100.0% 80.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3210584 101.1.1.336 alpha arrays › HTH › HTH › Three-helical HTH › Tri-helical 0.58 42.0 3.84e-01 83.6% 57.6%
3597496 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.57 50.0 3.59e-01 100.0% 94.6%
3971074 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 44.0 3.06e-01 98.4% 57.0%
D2 high residues 77-154
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.80 60.0 4.97e-01 100.0% 46.6%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.73 43.0 3.67e-01 74.4% 39.0%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.68 62.0 4.70e-01 100.0% 97.2%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.66 56.0 4.30e-01 97.4% 42.4%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.64 58.0 3.50e-01 100.0% 16.3%
5tz6B02 3.10.129.120 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.63 54.0 4.32e-01 93.6% 68.8%
1z6bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 54.0 4.39e-01 97.4% 78.2%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.60 54.0 3.36e-01 97.4% 23.7%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.60 50.0 5.04e-01 97.4% 90.9%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 55.0 4.68e-01 100.0% 99.2%
5dstA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.59 53.0 4.07e-01 100.0% 62.1%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 49.0 3.35e-01 89.7% 45.6%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.59 49.0 3.67e-01 94.9% 56.2%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.59 52.0 4.03e-01 100.0% 62.4%
4rljB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 51.0 4.20e-01 100.0% 89.1%
3zpmA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.59 50.0 3.79e-01 100.0% 58.3%
5e1vB00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.59 49.0 3.37e-01 92.3% 39.4%
4k02A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 48.0 4.16e-01 93.6% 86.6%
2gvhB02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 48.0 4.28e-01 94.9% 89.7%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 48.0 4.02e-01 93.6% 81.4%
3b7kC02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 48.0 4.38e-01 94.9% 98.2%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.58 40.0 3.41e-01 100.0% 42.2%
1y7uA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 49.0 3.93e-01 97.4% 70.1%
1jkgB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 3.85e-01 97.4% 76.1%
2cwzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 48.0 4.08e-01 96.2% 86.9%
1tk1A00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.57 49.0 3.57e-01 94.9% 34.7%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 52.0 4.65e-01 97.4% 99.0%
2gvhC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 48.0 4.15e-01 100.0% 83.1%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 4.03e-01 96.2% 71.8%
2q2bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 48.0 4.01e-01 96.2% 75.9%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.56 40.0 3.50e-01 98.7% 48.0%
2f3xA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 47.0 3.92e-01 94.9% 72.0%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.56 49.0 3.92e-01 98.7% 57.4%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 3.99e-01 96.2% 85.8%
4rljA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 48.0 4.01e-01 100.0% 99.3%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 3.69e-01 98.7% 55.3%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 48.0 4.50e-01 100.0% 79.0%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.55 47.0 4.68e-01 97.4% 91.4%
2uvaG08 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 47.0 3.20e-01 96.2% 45.1%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.54 47.0 3.20e-01 100.0% 28.3%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 46.0 3.11e-01 98.7% 25.3%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.53 47.0 2.91e-01 100.0% 52.8%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 46.0 3.93e-01 94.9% 79.7%
5fubA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.53 47.0 3.57e-01 100.0% 61.5%
2nujA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 42.0 3.53e-01 93.6% 72.3%
1u5uA00 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.52 45.0 2.95e-01 100.0% 34.2%
3kh8B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 42.0 3.51e-01 96.2% 90.3%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 42.0 3.74e-01 96.2% 92.3%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 39.0 3.27e-01 87.2% 87.2%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3254046 243.1.1.9 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF1348 0.66 50.0 3.96e-01 80.8% 82.5%
4014154 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 50.0 4.01e-01 80.8% 85.5%
3290197 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.64 57.0 4.08e-01 97.4% 55.5%
3251788 9.1.1.37 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 0.64 58.0 4.49e-01 100.0% 54.5%
3977398 5084.1.1.16 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Ail_Lom 0.63 56.0 4.43e-01 100.0% 58.7%
3407004 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.63 56.0 4.07e-01 100.0% 60.0%
3507449 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.63 55.0 4.01e-01 97.4% 36.6%
4304169 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.62 53.0 4.09e-01 93.6% 68.6%
3404435 3698.1.1.2 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C 0.62 54.0 4.10e-01 94.9% 61.7%
4017019 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.62 51.0 3.90e-01 93.6% 63.7%
3779928 3698.1.1.2 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C 0.61 54.0 4.04e-01 97.4% 59.5%
4025003 222.1.1.5 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA 0.61 52.0 4.10e-01 94.9% 70.7%
3397042 3698.1.1.2 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C 0.60 55.0 4.17e-01 100.0% 62.9%
3349123 883.1.1.15 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.60 52.0 3.28e-01 100.0% 22.7%
3714351 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.60 51.0 4.13e-01 96.2% 87.0%
4043673 222.1.1.5 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA 0.60 52.0 4.17e-01 96.2% 73.5%
3285471 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.60 52.0 4.33e-01 100.0% 92.4%
3265183 243.3.1.48 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › GlfB_C 0.59 46.0 3.26e-01 92.3% 27.7%
4036788 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.59 50.0 3.89e-01 96.2% 66.7%
3439157 3698.1.1.2 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C 0.59 50.0 3.75e-01 97.4% 55.7%
4040739 867.1.1.1 a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coprogen_oxidas 0.59 52.0 3.51e-01 100.0% 73.2%
4446229 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.58 50.0 4.25e-01 96.2% 90.0%
4286606 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.58 48.0 3.99e-01 94.9% 79.3%
3279685 222.1.1.9 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.58 50.0 3.82e-01 100.0% 72.5%
4664187 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.57 48.0 3.95e-01 96.2% 77.4%
4226250 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.57 47.0 3.61e-01 94.9% 57.5%
5079018 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 44.0 4.33e-01 88.5% 77.6%
4042539 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.57 48.0 3.79e-01 96.2% 66.3%
4466051 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.57 47.0 3.89e-01 94.9% 80.0%
3278540 222.1.1.9 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.57 50.0 4.08e-01 100.0% 96.7%
3251350 867.1.1.1 a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coprogen_oxidas 0.57 50.0 3.36e-01 100.0% 66.3%
3960870 222.1.1.9 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.56 48.0 3.86e-01 96.2% 93.8%
3279595 222.1.1.20 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.56 48.0 3.89e-01 100.0% 86.9%
5071621 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 40.0 2.88e-01 94.9% 24.4%
3701306 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.55 48.0 3.57e-01 100.0% 96.7%
4608000 222.1.1.9 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.55 46.0 3.95e-01 100.0% 95.7%
4342757 222.1.1.9 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.54 46.0 3.73e-01 97.4% 90.6%
3787831 243.1.1.50 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind 0.54 47.0 3.34e-01 100.0% 53.9%
3896925 5089.1.1.3 beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Gasdermin 0.54 46.0 3.35e-01 100.0% 57.1%
1308671 222.1.1.20 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.54 43.0 3.70e-01 91.0% 93.9%
5043598 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 47.0 3.86e-01 100.0% 85.0%
3404731 5084.5.1.37 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C 0.52 46.0 3.54e-01 100.0% 46.7%
4042211 222.1.1.9 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.52 43.0 3.46e-01 94.9% 80.0%
5031081 243.3.1.59 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › GvpO 0.51 36.0 3.64e-01 93.6% 76.2%
3933957 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.50 43.0 3.50e-01 100.0% 58.7%