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KY979235.1__ASD52465.1__X__00054
Bact-VirKY979235.1__ASD52465.1__X__00054
Identity
- Accession:
- KY979235 ↗
- Kingdom:
- phage
Quality
93.6
mean pLDDT
Taxonomy
TaxID: 1033977
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-126
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13245.13 best | AAA_19 | 26.1 | 1.20e-05 | 100.0% | 51.5% |
| PF05970.21 | PIF1 | 43.9 | 3.10e-11 | 98.8% | 34.5% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fhgA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.90 | 85.0 | 6.21e-01 | 100.0% | 45.1% |
| 6s3eB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.89 | 83.0 | 6.11e-01 | 100.0% | 48.2% |
| 8bnsD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.86 | 81.0 | 6.01e-01 | 100.0% | 47.0% |
| 6znpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 60.0 | 4.44e-01 | 100.0% | 58.5% |
| 3e1sA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 60.0 | 4.35e-01 | 100.0% | 37.3% |
| 1q57G02 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.63 | 53.0 | 4.67e-01 | 100.0% | 61.9% |
| 4a8tA02 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.62 | 41.0 | 3.29e-01 | 98.8% | 34.1% |
| 5lklB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 55.0 | 4.58e-01 | 100.0% | 67.4% |
| 2n3zA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 48.0 | 4.51e-01 | 100.0% | 69.7% |
| 1judA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.60 | 41.0 | 3.49e-01 | 100.0% | 40.7% |
| 3dnfB01 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.60 | 49.0 | 4.61e-01 | 98.8% | 74.0% |
| 4a15A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 53.0 | 4.11e-01 | 100.0% | 59.2% |
| 1v6zA02 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.59 | 45.0 | 3.60e-01 | 100.0% | 41.4% |
| 3imkA00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 48.0 | 3.94e-01 | 93.9% | 53.8% |
| 1vddA03 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.57 | 49.0 | 4.80e-01 | 100.0% | 93.5% |
| 6fwrA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 50.0 | 3.73e-01 | 100.0% | 66.0% |
| 3odpA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.55 | 48.0 | 3.77e-01 | 100.0% | 46.2% |
| 3hh8A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.55 | 46.0 | 3.84e-01 | 100.0% | 52.3% |
| 3gt7A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 45.0 | 3.86e-01 | 100.0% | 56.8% |
| 2aefA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 47.0 | 4.28e-01 | 100.0% | 78.3% |
| 4m8kA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.53 | 46.0 | 3.48e-01 | 100.0% | 80.3% |
| 2kpoA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 44.0 | 4.07e-01 | 100.0% | 70.0% |
| 2x4gA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 47.0 | 3.20e-01 | 100.0% | 30.8% |
| 2l69A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 46.0 | 3.96e-01 | 100.0% | 76.1% |
| 3qvoA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 45.0 | 3.50e-01 | 100.0% | 49.5% |
| 4mwaA00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.52 | 45.0 | 3.25e-01 | 100.0% | 96.2% |
| 2xdqB02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 42.0 | 4.15e-01 | 100.0% | 84.4% |
| 4ag6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 44.0 | 3.24e-01 | 100.0% | 79.9% |
| 2v3jA01 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.51 | 44.0 | 3.31e-01 | 98.8% | 39.4% |
| 1g5qA00 | 3.40.50.1950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like | 0.51 | 44.0 | 3.53e-01 | 100.0% | 78.2% |
| 3pl2A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 44.0 | 3.15e-01 | 100.0% | 43.8% |
| 2i6xA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.51 | 44.0 | 3.82e-01 | 100.0% | 83.6% |
| 2c0hA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 43.0 | 2.91e-01 | 100.0% | 32.9% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4818378 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.91 | 86.0 | 6.28e-01 | 100.0% | 49.2% |
| 3939461 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.90 | 84.0 | 5.91e-01 | 100.0% | 42.2% |
| 4164708 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.87 | 81.0 | 5.84e-01 | 100.0% | 42.9% |
| 3594078 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.86 | 79.0 | 5.84e-01 | 100.0% | 47.5% |
| 3891480 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.86 | 80.0 | 5.09e-01 | 100.0% | 29.0% |
| 3897722 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.86 | 80.0 | 5.68e-01 | 100.0% | 45.8% |
| 3023951 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.86 | 80.0 | 5.94e-01 | 100.0% | 46.0% |
| 3930015 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.85 | 80.0 | 5.56e-01 | 100.0% | 37.4% |
| 3387945 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.85 | 79.0 | 6.04e-01 | 100.0% | 50.9% |
| 3292740 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.85 | 74.0 | 5.91e-01 | 93.9% | 50.7% |
| 3703483 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.85 | 79.0 | 5.52e-01 | 100.0% | 39.1% |
| 3675051 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.85 | 78.0 | 5.76e-01 | 100.0% | 45.0% |
| None | — | 0.85 | 78.0 | 5.71e-01 | 100.0% | 45.9% | |
| 3718866 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.84 | 78.0 | 5.56e-01 | 100.0% | 41.8% |
| 3272957 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.84 | 78.0 | 5.53e-01 | 100.0% | 40.9% |
| 3316169 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.84 | 77.0 | 4.77e-01 | 100.0% | 19.8% |
| None | — | 0.84 | 77.0 | 5.77e-01 | 100.0% | 48.9% | |
| None | — | 0.84 | 77.0 | 5.57e-01 | 100.0% | 42.8% | |
| 3498029 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.83 | 76.0 | 5.62e-01 | 100.0% | 55.0% |
| 3225963 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.83 | 77.0 | 5.97e-01 | 100.0% | 55.8% |
| None | — | 0.82 | 76.0 | 5.71e-01 | 100.0% | 50.3% | |
| 4202661 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.82 | 75.0 | 5.74e-01 | 100.0% | 51.1% |
| 3267799 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.82 | 75.0 | 5.45e-01 | 100.0% | 48.4% |
| 3592526 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.81 | 74.0 | 5.31e-01 | 100.0% | 45.3% |
| 3364368 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.80 | 59.0 | 5.73e-01 | 97.6% | 70.0% |
| 3713458 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.79 | 72.0 | 5.29e-01 | 100.0% | 49.0% |
| 3601026 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.76 | 68.0 | 5.24e-01 | 100.0% | 53.6% |
| 3719059 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.74 | 68.0 | 4.75e-01 | 100.0% | 35.2% |
| 3596424 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.73 | 65.0 | 4.87e-01 | 100.0% | 40.5% |
| 3605124 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.72 | 66.0 | 4.89e-01 | 100.0% | 47.0% |
| 3598018 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.63 | 45.0 | 3.65e-01 | 100.0% | 40.0% |
| 4030842 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.62 | 55.0 | 4.22e-01 | 100.0% | 57.4% |
| 2028439 | 2004.1.1.151 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Flavi_DEAD | 0.62 | 55.0 | 4.48e-01 | 100.0% | 62.2% |
| 4982500 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 54.0 | 3.60e-01 | 100.0% | 29.3% |
| 3936412 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 52.0 | 4.76e-01 | 100.0% | 97.3% |
| 5052483 | 2007.2.1.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_4 | 0.59 | 51.0 | 4.19e-01 | 100.0% | 61.3% |
| 3456910 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.57 | 38.0 | 3.65e-01 | 98.8% | 57.0% |
| 5012600 | 2004.1.1.1200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF835 | 0.57 | 45.0 | 3.81e-01 | 100.0% | 51.4% |
| 4386709 | 2007.1.14.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA | 0.56 | 44.0 | 3.67e-01 | 98.8% | 47.1% |
| 4188026 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.55 | 43.0 | 3.66e-01 | 96.3% | 50.7% |
| 4990158 | 2004.1.1.194 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 | 0.55 | 48.0 | 3.57e-01 | 100.0% | 59.1% |
| 4980615 | 2007.1.14.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA | 0.54 | 43.0 | 3.69e-01 | 98.8% | 51.7% |
| 4939330 | 2007.1.14.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA | 0.54 | 43.0 | 3.62e-01 | 100.0% | 48.4% |
| 4163353 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.54 | 47.0 | 3.52e-01 | 100.0% | 52.3% |
| 5039478 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.54 | 47.0 | 3.08e-01 | 100.0% | 27.5% |
| 4539739 | 2002.1.1.87 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Melibiase | 0.53 | 46.0 | 3.19e-01 | 100.0% | 51.6% |
| 4077066 | 2002.1.1.87 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Melibiase | 0.53 | 46.0 | 3.14e-01 | 100.0% | 46.7% |
| 3175302 | 207.1.1.198 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF29247 | 0.52 | 46.0 | 2.89e-01 | 100.0% | 51.0% |
| None | — | 0.51 | 43.0 | 2.90e-01 | 100.0% | 23.0% | |
| 5032372 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.51 | 42.0 | 3.31e-01 | 95.1% | 46.3% |
| 4031702 | 2003.1.1.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA | 0.50 | 44.0 | 3.92e-01 | 100.0% | 77.5% |