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KY981271.1__ASJ79165.1__P26059A_0013__00013
Bact-VirKY981271.1__ASJ79165.1__P26059A_0013__00013
Identity
- Accession:
- KY981271 ↗
- Kingdom:
- phage
Quality
88.1
mean pLDDT
Cluster
View cluster (47 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-129
Domain cluster:
rep: NC_027981.1__YP_009167713.1__APL38_gp06__00006__D10-103
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02924.20 best | HDPD | 59.5 | 4.70e-16 | 97.2% | 83.6% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.85 | 71.0 | 7.51e-01 | 99.1% | 97.9% |
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.84 | 70.0 | 7.45e-01 | 97.2% | 100.0% |
| 3qgaA02 | 2.10.150.10 | Mainly Beta › Ribbon › Urease, subunit B › Urease, beta subunit | 0.58 | 45.0 | 4.36e-01 | 95.3% | 72.1% |
| 4ep8B00 | 2.10.150.10 | Mainly Beta › Ribbon › Urease, subunit B › Urease, beta subunit | 0.58 | 44.0 | 4.48e-01 | 93.4% | 84.2% |
| 3p26A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 35.0 | 3.53e-01 | 94.3% | 69.1% |
| 3e38A02 | 2.60.40.3090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 29.0 | 3.28e-01 | 74.5% | 74.7% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.86 | 71.0 | 7.06e-01 | 98.1% | 84.4% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.83 | 70.0 | 7.26e-01 | 99.1% | 95.0% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.75 | 43.0 | 5.47e-01 | 95.3% | 100.0% |
| 3670049 | 11.5.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Urease, beta-subunit › Urease, beta-subunit › Urease_beta,Urease_linker | 0.59 | 44.0 | 4.13e-01 | 95.3% | 62.7% |
| 3694337 | 11.5.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Urease, beta-subunit › Urease, beta-subunit › Urease_beta | 0.58 | 45.0 | 4.35e-01 | 95.3% | 72.5% |
| 4602455 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.58 | 39.0 | 4.55e-01 | 90.6% | 100.0% |
| 3188617 | 11.5.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Urease, beta-subunit › Urease, beta-subunit › Urease_beta | 0.58 | 45.0 | 4.04e-01 | 95.3% | 58.0% |
| 185398 | 11.5.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Urease, beta-subunit › Urease, beta-subunit › Urease_beta,Urease_linker | 0.58 | 45.0 | 4.06e-01 | 95.3% | 59.6% |
| 3263272 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.57 | 36.0 | 3.33e-01 | 97.2% | 47.9% |
| 1138674 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.51 | 35.0 | 3.53e-01 | 94.3% | 69.1% |