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KY981271.1__ASJ79177.1__P26059A_0025__00025

Bact-Vir

KY981271.1__ASJ79177.1__P26059A_0025__00025

Identity

Accession:
KY981271 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Curvibacter_phage_P26059A

TaxID: 1983783

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-23_37-119
PDB
Domain cluster: rep: NC_052650__YP_009981828.1__JR051-gp22__00022__D4-23_42-109
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2axyA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.67 38.0 4.42e-01 83.3% 79.2%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 59.0 5.37e-01 100.0% 85.4%
1u7lA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 42.0 4.52e-01 89.2% 74.4%
2oo4A02 3.30.70.3310 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 42.0 4.15e-01 74.5% 60.4%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.64 52.0 5.36e-01 100.0% 92.6%
6sulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 46.0 4.53e-01 92.2% 70.4%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 41.0 4.45e-01 95.1% 80.2%
4qjvA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.62 37.0 3.93e-01 93.1% 67.4%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.62 56.0 4.93e-01 100.0% 80.3%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 42.0 4.57e-01 99.0% 88.5%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.59 52.0 4.14e-01 99.0% 73.3%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 35.0 3.76e-01 94.1% 68.2%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 39.0 4.10e-01 91.2% 77.5%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.56 45.0 4.06e-01 87.3% 70.4%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 36.0 3.70e-01 94.1% 70.2%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.55 45.0 4.20e-01 87.3% 91.9%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.67e-01 93.1% 63.6%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.55 48.0 4.40e-01 100.0% 86.0%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.54 47.0 4.52e-01 99.0% 84.0%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.62e-01 70.6% 65.1%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 38.0 4.01e-01 99.0% 83.1%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 39.0 3.88e-01 100.0% 71.2%
5suhB01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.54 38.0 3.89e-01 95.1% 76.8%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 4.11e-01 93.1% 87.5%
4z1xA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 39.0 3.48e-01 100.0% 54.5%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 38.0 3.45e-01 100.0% 55.0%
2psoB02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 3.66e-01 91.2% 78.1%
2cg9X01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.81e-01 96.1% 77.0%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 43.0 3.33e-01 91.2% 74.5%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.51 36.0 2.96e-01 72.5% 69.6%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 39.0 3.64e-01 100.0% 64.8%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.72e-01 96.1% 72.7%
2govA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.51 36.0 3.07e-01 85.3% 43.9%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 46.0 4.29e-01 99.0% 81.5%
1tz0B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 33.0 3.40e-01 91.2% 69.1%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 39.0 3.35e-01 100.0% 52.2%
1af5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 37.0 3.50e-01 100.0% 63.5%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.50 39.0 3.56e-01 89.2% 61.4%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164699 1.1.13.33 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.74 68.0 6.54e-01 99.0% 94.8%
3959682 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 44.0 5.01e-01 93.1% 81.3%
3384789 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.73 44.0 4.35e-01 93.1% 56.4%
4138832 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.70 43.0 4.58e-01 94.1% 69.7%
3387224 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.69 50.0 4.64e-01 99.0% 59.2%
3659065 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.69 45.0 4.57e-01 93.1% 67.0%
3367405 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.68 42.0 4.12e-01 93.1% 57.3%
3165990 310.3.1.22 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PF27480, PF30181 0.67 46.0 4.47e-01 100.0% 63.5%
3825541 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.66 44.0 4.31e-01 93.1% 62.7%
3369744 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 41.0 3.99e-01 93.1% 58.3%
4545902 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 41.0 4.38e-01 94.1% 75.6%
4225320 306.3.1.4 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › PFF1_C 0.63 40.0 4.01e-01 97.1% 61.9%
3059162 1.1.13.30 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.63 57.0 5.32e-01 100.0% 90.3%
4372378 306.3.1.4 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › PFF1_C 0.62 40.0 4.31e-01 96.1% 77.6%
4371063 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 43.0 4.34e-01 89.2% 73.0%
5083300 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.60 54.0 4.81e-01 100.0% 86.9%
4614530 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.59 46.0 4.42e-01 96.1% 70.8%
3409790 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 42.0 3.03e-01 93.1% 26.9%
4809346 1.1.13.57 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.59 46.0 4.87e-01 95.1% 98.8%
3941988 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 53.0 5.09e-01 100.0% 90.4%
5075416 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.59 41.0 4.05e-01 100.0% 67.3%
4028502 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.58 46.0 4.38e-01 93.1% 71.7%
5556 242.1.1.4 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Endonuc_subdom 0.58 42.0 4.36e-01 100.0% 79.6%
3758110 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.58 43.0 3.32e-01 100.0% 34.0%
4319533 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.58 46.0 4.12e-01 94.1% 61.4%
5029252 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.57 41.0 3.91e-01 100.0% 63.3%
5030026 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.56 39.0 4.13e-01 100.0% 82.2%
3491434 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.56 40.0 3.73e-01 74.5% 99.2%
3658804 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.56 41.0 4.02e-01 100.0% 70.4%
5052852 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.55 50.0 4.11e-01 100.0% 82.6%
4992759 2003.1.5.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 0.55 43.0 3.39e-01 97.1% 39.1%
3286469 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 46.0 3.81e-01 91.2% 57.1%
4937023 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.54 41.0 4.14e-01 100.0% 81.0%
4936151 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 46.0 3.97e-01 94.1% 69.4%
4979632 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 41.0 3.40e-01 100.0% 46.7%
3175120 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.53 42.0 4.10e-01 100.0% 79.1%
3179676 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 43.0 3.00e-01 93.1% 26.5%
3173041 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.53 40.0 3.75e-01 100.0% 65.6%
3971583 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 41.0 3.68e-01 91.2% 60.0%
3403837 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.96e-01 95.1% 79.0%
5031493 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.52 37.0 4.17e-01 94.1% 98.7%
4115001 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 38.0 3.56e-01 100.0% 62.3%
3738339 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 37.0 3.51e-01 100.0% 62.4%
3969556 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 42.0 3.57e-01 91.2% 86.9%
2411782 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.50 37.0 3.32e-01 100.0% 54.1%
135378 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.50 37.0 3.16e-01 100.0% 46.6%