←Back to structures

KY981271.1__ASJ79273.1__P26059A_0121__00121

Bact-Vir

KY981271.1__ASJ79273.1__P26059A_0121__00121

Identity

Accession:
KY981271 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Curvibacter_phage_P26059A

TaxID: 1983783

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-124
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 26.0 3.42e-01 86.7% 61.5%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.67 23.0 3.48e-01 81.7% 72.0%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 23.0 2.94e-01 86.7% 50.7%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 23.0 3.36e-01 81.7% 70.9%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.61 30.0 3.38e-01 84.2% 59.8%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.59 23.0 2.87e-01 83.3% 53.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 22.0 2.86e-01 100.0% 57.4%
1on3B01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.56 49.0 3.87e-01 95.8% 57.9%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.56 27.0 3.51e-01 89.2% 83.3%
3ny7A00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.54 41.0 4.17e-01 80.0% 82.2%
5karA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 45.0 3.23e-01 95.8% 98.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 21.0 2.63e-01 81.7% 52.9%
4i3gA02 3.40.50.1700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain 0.52 42.0 3.60e-01 88.3% 69.0%
2panA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.51 41.0 3.74e-01 88.3% 88.2%
1onwA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.51 45.0 3.57e-01 100.0% 79.7%
2c31A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.51 40.0 3.56e-01 87.5% 80.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018356 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.75 53.0 3.92e-01 72.5% 35.3%
5020648 207.2.1.121 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Disaggr_assoc 0.75 53.0 3.41e-01 72.5% 19.8%
5003179 207.2.1.121 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Disaggr_assoc 0.73 53.0 3.54e-01 74.2% 22.2%
3987209 207.2.1.21 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3,Beta_helix 0.73 56.0 3.64e-01 88.3% 20.2%
4940157 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.69 24.0 3.50e-01 83.3% 67.3%
142631 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 26.0 3.42e-01 86.7% 61.5%
4113537 2.1.1.327 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27401 0.66 25.0 3.31e-01 85.8% 60.0%
3387984 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.65 25.0 2.92e-01 86.7% 45.9%
4269264 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.63 21.0 3.29e-01 85.8% 73.3%
3967108 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.63 21.0 3.38e-01 86.7% 82.5%
5051419 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 24.0 3.32e-01 86.7% 69.1%
4384294 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.62 21.0 3.35e-01 86.7% 82.5%
4378659 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.61 22.0 3.25e-01 86.7% 75.6%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.59 23.0 3.06e-01 83.3% 63.1%
3508175 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.58 26.0 3.75e-01 90.0% 100.0%
2512682 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 27.0 3.61e-01 98.3% 90.9%
3291881 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.57 46.0 3.43e-01 86.7% 48.3%
4939438 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 39.0 3.79e-01 83.3% 64.3%
3650026 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 27.0 3.63e-01 84.2% 92.3%
4977249 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.52 40.0 3.92e-01 83.3% 84.4%
3998328 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.51 41.0 3.20e-01 88.3% 67.2%
4947646 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 40.0 4.01e-01 84.2% 88.8%
D2 high residues 132-217
PDB
Domain cluster: representative
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.78 65.0 6.28e-01 100.0% 79.4%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.77 66.0 6.70e-01 100.0% 94.1%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 57.0 6.07e-01 100.0% 98.7%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.70 62.0 6.13e-01 100.0% 92.4%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 61.0 6.21e-01 100.0% 98.8%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 63.0 6.06e-01 100.0% 88.8%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 57.0 5.95e-01 100.0% 98.7%
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.69 62.0 5.96e-01 100.0% 96.9%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.69 61.0 5.96e-01 100.0% 96.9%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 62.0 5.94e-01 100.0% 95.0%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.68 56.0 5.48e-01 100.0% 83.7%
8gz3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 59.0 5.79e-01 96.5% 95.7%
2ok7A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 61.0 5.61e-01 100.0% 90.2%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.67 57.0 4.56e-01 91.9% 87.3%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 60.0 5.54e-01 100.0% 91.9%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 60.0 5.88e-01 100.0% 93.4%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 58.0 5.51e-01 100.0% 97.1%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 59.0 5.11e-01 100.0% 66.4%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 52.0 5.04e-01 96.5% 77.1%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.64 56.0 5.58e-01 100.0% 95.6%
1nrkA03 2.40.30.160 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 51.0 4.54e-01 89.5% 78.7%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.62 53.0 5.40e-01 100.0% 98.8%
4zj9A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 44.0 4.35e-01 75.6% 98.9%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.60 54.0 5.41e-01 100.0% 96.6%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.50e-01 89.5% 95.2%
4cvuA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 52.0 4.66e-01 100.0% 90.8%
2c9aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.64e-01 100.0% 81.4%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.39e-01 100.0% 79.2%
5e4eC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.30e-01 100.0% 75.2%
1tdqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.50e-01 100.0% 86.7%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 4.88e-01 100.0% 98.8%
3ndzE00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 4.42e-01 98.8% 94.4%
1wh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 46.0 4.30e-01 95.3% 91.0%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 4.43e-01 93.0% 88.2%
1iarB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.46e-01 100.0% 85.4%
2kzbA00 2.60.40.2830 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 4.14e-01 100.0% 71.9%
3nk4A02 2.60.40.4100 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain 0.54 46.0 3.81e-01 97.7% 94.4%
2covG00 2.60.40.2450 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain 0.54 37.0 3.76e-01 97.7% 71.6%
5h5zA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 4.42e-01 98.8% 88.6%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 4.09e-01 95.3% 84.3%
1mfnA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 4.34e-01 100.0% 86.0%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 4.23e-01 100.0% 80.6%
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 4.17e-01 100.0% 85.4%
3im9A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.53 36.0 3.86e-01 87.2% 83.8%
7mxdX01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 4.10e-01 98.8% 90.8%
1fnfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 4.14e-01 100.0% 85.4%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 4.27e-01 98.8% 82.7%
1xzwA01 2.60.40.380 Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal 0.52 44.0 4.25e-01 98.8% 84.7%
7xc8A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.52 44.0 4.33e-01 97.7% 100.0%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 4.18e-01 98.8% 78.2%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 4.00e-01 100.0% 83.9%
7l15A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 4.02e-01 96.5% 81.4%
2eefA01 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.51 44.0 3.96e-01 98.8% 67.7%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.96e-01 98.8% 73.8%
8owfA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 4.05e-01 98.8% 91.0%
2w1nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.76e-01 94.2% 80.5%
6xaxA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.83e-01 96.5% 82.4%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.05e-01 98.8% 82.3%
3r8qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.90e-01 100.0% 82.2%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 4.04e-01 96.5% 88.5%
2gysA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 4.26e-01 98.8% 95.8%
3wnkA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 44.0 3.90e-01 96.5% 97.6%
3lb6C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.71e-01 97.7% 76.1%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3488003 1.1.7.35 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.83 73.0 7.36e-01 100.0% 94.1%
4028468 1.1.7.35 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.80 67.0 6.23e-01 100.0% 72.4%
3972102 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 54.0 5.16e-01 76.7% 78.0%
3389361 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 65.0 6.33e-01 100.0% 89.5%
3783623 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.73 67.0 6.33e-01 100.0% 96.0%
4477675 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.71 65.0 6.05e-01 100.0% 84.8%
4214150 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.71 57.0 5.31e-01 88.4% 71.8%
5082517 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.70 63.0 6.01e-01 100.0% 95.0%
4366483 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 57.0 5.79e-01 100.0% 90.6%
3614391 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 63.0 5.98e-01 100.0% 92.0%
3944005 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.69 61.0 5.32e-01 100.0% 68.4%
4053523 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.69 62.0 5.92e-01 100.0% 95.0%
3254529 1.1.7.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.69 62.0 5.09e-01 100.0% 67.7%
5045937 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.69 61.0 5.86e-01 100.0% 94.0%
3972868 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.68 61.0 5.86e-01 100.0% 94.0%
3686772 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.68 60.0 5.51e-01 98.8% 99.1%
4980441 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 61.0 5.90e-01 98.8% 96.8%
4572309 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 62.0 5.37e-01 100.0% 83.1%
3197684 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.68 60.0 5.27e-01 98.8% 95.4%
3630866 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.68 60.0 5.30e-01 100.0% 91.5%
5069408 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.68 61.0 6.03e-01 100.0% 97.8%
3789503 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.67 59.0 5.59e-01 100.0% 92.4%
5075926 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.67 61.0 5.83e-01 100.0% 87.0%
4980160 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 61.0 5.77e-01 100.0% 87.0%
4954736 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 56.0 5.72e-01 97.7% 95.3%
3172792 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.66 59.0 5.55e-01 100.0% 84.8%
4136251 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.66 59.0 5.56e-01 100.0% 89.5%
4085589 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.66 55.0 5.67e-01 100.0% 98.8%
3949052 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 58.0 5.72e-01 100.0% 94.4%
142515 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.65 58.0 5.45e-01 100.0% 94.4%
4381868 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 53.0 5.28e-01 100.0% 90.0%
4083333 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 54.0 5.25e-01 100.0% 87.4%
3868227 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 53.0 5.18e-01 100.0% 90.5%
3965887 11.1.1.457 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FixH 0.61 52.0 4.89e-01 94.2% 94.3%
4055193 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 52.0 5.11e-01 100.0% 88.4%
5025266 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 54.0 5.08e-01 100.0% 84.8%
3259432 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 4.60e-01 97.7% 84.7%
3258964 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 4.73e-01 98.8% 85.6%
4042679 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 49.0 4.92e-01 98.8% 95.3%
5036517 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.23e-01 93.0% 91.9%
3504294 1.1.7.27 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905 0.58 48.0 4.75e-01 94.2% 97.8%
3251680 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.57 50.0 4.49e-01 98.8% 74.4%
3247872 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.57 51.0 4.49e-01 98.8% 74.4%
3251337 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.23e-01 98.8% 61.5%
3761541 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 50.0 4.81e-01 100.0% 87.0%
3898732 11.1.1.560 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKAT_KLD 0.56 45.0 4.52e-01 100.0% 84.4%
3884572 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.77e-01 98.8% 95.3%
3716956 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 4.68e-01 100.0% 84.0%
1501 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 4.79e-01 100.0% 92.6%
3273347 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.56 46.0 3.96e-01 94.2% 85.5%
3935944 355.1.1.11 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › TIG_plexin 0.55 49.0 4.55e-01 100.0% 81.8%
4612821 11.1.1.46 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha-amylase_N 0.55 47.0 4.22e-01 95.3% 84.2%
3277081 11.1.1.1315 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034, DUF7743 0.55 46.0 3.14e-01 94.2% 33.6%
3910743 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 44.0 4.37e-01 98.8% 85.6%
3996520 11.1.1.54 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.55 46.0 4.09e-01 98.8% 63.8%
3268571 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.54 47.0 3.70e-01 98.8% 47.7%
4943962 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.27e-01 93.0% 97.1%
5061498 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.21e-01 98.8% 26.2%
3969203 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.54 44.0 4.05e-01 100.0% 68.7%
3988705 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 4.44e-01 98.8% 88.9%
1944061 11.1.1.279 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TarS_C1 0.53 45.0 3.87e-01 95.3% 93.6%
3174585 11.1.1.54 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.53 45.0 3.67e-01 100.0% 63.9%
3473056 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 44.0 4.08e-01 100.0% 73.6%
3256726 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 4.13e-01 100.0% 73.0%
3885658 11.1.1.126 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL4Ra_N 0.52 43.0 4.22e-01 100.0% 84.2%
2389475 11.1.5.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_2 0.52 45.0 4.28e-01 98.8% 97.1%
3403062 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 43.0 4.18e-01 98.8% 84.2%
3905772 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.52 43.0 4.16e-01 96.5% 81.0%
2834589 11.1.1.334 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TSLPR_D1 0.52 43.0 4.12e-01 98.8% 81.0%
3939886 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.46e-01 98.8% 48.8%
3601034 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.04e-01 100.0% 29.9%
3638266 11.1.1.554 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PhoD_2 0.51 44.0 4.24e-01 97.7% 87.0%
3505411 11.1.1.54 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.51 44.0 3.80e-01 100.0% 64.3%
3997601 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 43.0 4.08e-01 100.0% 79.0%
3492387 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 43.0 3.79e-01 98.8% 77.0%
D3 medium residues 233-297
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.88 81.0 5.43e-01 100.0% 36.3%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.83 75.0 4.36e-01 100.0% 34.9%
1rwrA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.64 55.0 3.61e-01 98.5% 39.1%
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.59 47.0 4.16e-01 87.7% 69.1%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.59 42.0 3.63e-01 86.2% 46.2%
4kh3A00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.56 48.0 2.89e-01 98.5% 25.0%
1u7zC00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.53 42.0 3.08e-01 95.4% 64.4%
4w8kA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.53 44.0 4.05e-01 100.0% 81.3%
2dsgA01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.50 37.0 3.29e-01 87.7% 80.7%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034985 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.91 75.0 5.19e-01 87.7% 30.5%
3324632 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.90 76.0 5.04e-01 90.8% 27.4%
4981814 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.87 76.0 4.62e-01 100.0% 17.2%
4969186 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.86 70.0 4.61e-01 87.7% 23.2%
4981967 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.86 79.0 4.81e-01 100.0% 17.3%
5039544 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.86 78.0 5.21e-01 100.0% 31.1%
5060991 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.85 78.0 4.74e-01 98.5% 24.6%
4940084 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.84 78.0 5.39e-01 100.0% 42.6%
4969388 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.83 77.0 4.73e-01 100.0% 25.0%
5048503 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.83 76.0 4.32e-01 100.0% 24.7%
4944589 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.83 76.0 5.08e-01 100.0% 37.4%
3307012 207.2.2.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › beta-helix domain of fiber adhesin › Glyco_hydro_28 0.82 72.0 5.26e-01 93.8% 51.9%
5046331 207.2.1.33 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pel9A-like_beta_helix 0.82 75.0 4.50e-01 100.0% 15.7%
4977972 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.82 75.0 4.85e-01 98.5% 32.2%
3649226 207.2.1.20 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.81 74.0 4.45e-01 100.0% 17.6%
3450871 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.81 74.0 4.73e-01 98.5% 27.6%
4944455 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.81 75.0 4.80e-01 100.0% 30.4%
4982073 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.81 75.0 4.62e-01 100.0% 23.9%
4944812 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.81 75.0 5.07e-01 100.0% 38.6%
4970160 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.79 73.0 4.39e-01 100.0% 21.0%
3302690 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.78 72.0 4.76e-01 100.0% 32.9%
4030537 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.78 56.0 3.47e-01 86.2% 13.7%
3705677 207.2.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.74 58.0 3.39e-01 84.6% 13.5%
3708280 207.3.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Insect cysteine-rich antifreeze protein › Insect cysteine-rich antifreeze protein 0.74 39.0 3.55e-01 83.1% 38.8%
3572033 207.2.1.70 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix 0.73 65.0 3.97e-01 98.5% 21.6%
4963682 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.70 61.0 4.51e-01 96.9% 51.5%
4002541 207.4.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC 0.67 49.0 3.73e-01 87.7% 32.5%
4929387 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.64 43.0 4.27e-01 86.2% 64.3%
3264625 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.64 43.0 3.18e-01 100.0% 24.2%
4024424 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.64 44.0 3.61e-01 84.6% 39.2%
4040388 207.8.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD,SufBD_N 0.62 55.0 3.35e-01 100.0% 67.4%
3983450 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.62 46.0 3.90e-01 84.6% 46.1%
3997590 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.61 41.0 4.22e-01 84.6% 75.0%
3629898 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.61 47.0 4.59e-01 100.0% 76.7%
2485695 207.15.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › beta-helix of amnionless (AMN) extracellular domain › beta-helix of amnionless (AMN) extracellular domain › Amnionless 0.60 39.0 3.59e-01 70.8% 48.4%
4321639 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.60 48.0 3.04e-01 95.4% 63.4%
4027019 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.58 45.0 3.52e-01 86.2% 42.8%
4159087 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.57 45.0 3.12e-01 87.7% 29.6%
2434107 207.9.1.8 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3, Pentapeptide_4 0.56 45.0 3.25e-01 87.7% 35.4%
3427943 208.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.54 46.0 3.22e-01 98.5% 40.9%
3870521 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.52 37.0 3.62e-01 78.5% 96.0%
D4 medium residues 298-389
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2uvfB02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.80 65.0 4.10e-01 100.0% 17.7%
1k5cA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 69.0 4.58e-01 100.0% 25.8%
5olpA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.76 68.0 4.28e-01 95.7% 20.4%
3jurA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.75 69.0 4.32e-01 100.0% 26.8%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.74 65.0 3.98e-01 95.7% 22.9%
6kqsA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.73 68.0 4.27e-01 100.0% 26.7%
2vjiA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.73 67.0 4.23e-01 100.0% 28.4%
5gkqB01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.70 62.0 4.00e-01 96.7% 22.8%
3gq8A01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.64 60.0 3.71e-01 100.0% 22.0%
8tmsA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.63 56.0 3.99e-01 98.9% 50.0%
1igrA01 3.80.20.20 Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain 0.63 47.0 3.79e-01 95.7% 40.2%
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.62 40.0 3.98e-01 94.6% 61.9%
2bm5B00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.60 39.0 3.15e-01 94.6% 32.8%
1k4zA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.60 46.0 3.85e-01 96.7% 48.4%
1wwlB00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.58 50.0 3.46e-01 95.7% 36.2%
4kh3A00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 46.0 2.85e-01 95.7% 19.3%
2xtwD00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.50 44.0 3.38e-01 96.7% 42.8%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937200 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.82 49.0 4.06e-01 95.7% 36.7%
3335252 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.79 67.0 5.20e-01 98.9% 43.1%
4969187 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.78 61.0 4.50e-01 95.7% 33.0%
3373292 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.77 61.0 4.11e-01 95.7% 24.0%
2139004 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.76 68.0 4.28e-01 95.7% 20.4%
3715374 207.14.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › DGF-1_beta-sheet 0.70 51.0 4.91e-01 100.0% 66.7%
4047028 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.70 64.0 3.97e-01 98.9% 41.5%
4981080 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.69 61.0 4.40e-01 96.7% 37.2%
3575994 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.68 43.0 4.70e-01 95.7% 78.7%
4935713 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.67 40.0 3.70e-01 94.6% 46.1%
4415076 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.67 62.0 4.20e-01 100.0% 39.0%
5034985 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.66 58.0 4.49e-01 98.9% 45.3%
5022167 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.66 57.0 3.69e-01 95.7% 23.0%
4014339 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.65 59.0 4.12e-01 100.0% 33.8%
5039543 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.65 60.0 3.85e-01 98.9% 28.5%
4969537 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.65 59.0 4.04e-01 98.9% 39.0%
4931622 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.65 59.0 3.98e-01 100.0% 28.8%
4029787 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.64 43.0 3.22e-01 95.7% 27.4%
4942768 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.64 58.0 4.45e-01 96.7% 50.5%
3672752 207.2.1.4 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase 0.63 49.0 3.54e-01 94.6% 29.2%
3586542 207.1.1.21 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.63 43.0 3.38e-01 96.7% 33.0%
3251267 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.61 55.0 3.62e-01 100.0% 27.3%
3539089 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.61 54.0 3.89e-01 96.7% 36.0%
3345005 207.4.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC 0.60 45.0 3.70e-01 97.8% 44.2%
5010532 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.58 53.0 3.47e-01 100.0% 69.9%
3246091 389.1.1.157 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Epiglycanin_TR 0.56 48.0 3.90e-01 95.7% 53.3%
4024424 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.50 36.0 3.37e-01 94.6% 59.2%
D5 medium residues 415-490
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rwrA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.57 50.0 3.40e-01 100.0% 39.4%
1wd5A01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 39.0 3.20e-01 89.5% 40.4%
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.51 45.0 4.13e-01 100.0% 75.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024460 208.7.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein 0.74 42.0 3.56e-01 100.0% 34.4%
5041137 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.69 44.0 4.59e-01 100.0% 71.4%
3612083 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.66 46.0 3.32e-01 100.0% 24.4%
3812365 207.4.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like 0.65 40.0 3.68e-01 100.0% 44.8%
3844962 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.65 48.0 4.08e-01 100.0% 49.2%
3993929 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.62 41.0 3.25e-01 100.0% 32.1%
3997590 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.61 36.0 4.00e-01 97.4% 75.0%
4028157 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.59 38.0 3.19e-01 100.0% 36.3%
3995373 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 50.0 3.15e-01 100.0% 24.1%
3433459 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 49.0 3.19e-01 100.0% 24.6%
3870521 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.55 46.0 4.67e-01 97.4% 98.7%
4856486 207.9.1.5 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › LD_SV2 0.50 44.0 3.89e-01 100.0% 66.7%
4929387 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.50 41.0 4.28e-01 100.0% 98.6%
None — 0.50 44.0 4.03e-01 100.0% 74.0%
D6 medium residues 491-541
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kh3A00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.64 49.0 2.86e-01 100.0% 8.9%
1gwbA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.62 51.0 3.28e-01 100.0% 18.9%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4969618 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.74 62.0 4.04e-01 100.0% 21.3%
3744798 208.1.1.43 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › DUF1720 0.71 46.0 3.30e-01 100.0% 22.7%
3629898 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.70 55.0 4.96e-01 100.0% 63.0%
3684090 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.69 50.0 4.46e-01 100.0% 53.3%
3870521 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.62 52.0 4.67e-01 100.0% 82.7%
3644440 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.62 51.0 3.15e-01 100.0% 16.3%
4951076 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.61 42.0 3.20e-01 100.0% 28.1%
D7 medium residues 542-639
PDB