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L13696.1__AAA87957.1__X__00002

Bact-Vir

L13696.1__AAA87957.1__X__00002

Identity

Accession:
L13696 ↗
Kingdom:
phage

Quality

61.9 mean pLDDT

Taxonomy

Plasmaviridae› Plasmavirus› Plasmavirus_L2

TaxID: 46014

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-175
PDB
D2 high residues 177-309
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 34.0 4.18e-01 77.4% 78.8%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 27.0 3.41e-01 77.4% 66.3%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 31.0 4.26e-01 83.5% 100.0%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.58 28.0 3.42e-01 81.2% 71.4%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 41.0 3.24e-01 76.7% 50.9%
5cfvA01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.55 34.0 3.72e-01 89.5% 75.7%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.55 31.0 3.54e-01 99.2% 75.3%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 34.0 3.72e-01 83.5% 76.6%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.52 30.0 3.51e-01 75.2% 83.3%
4rnyA03 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.50 32.0 3.32e-01 94.0% 66.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032371 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.64 34.0 4.43e-01 75.9% 95.7%
5077089 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 32.0 4.22e-01 88.0% 100.0%
5044263 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 30.0 3.98e-01 77.4% 94.3%
3947431 3454.1.1.2 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC 0.57 27.0 3.75e-01 72.9% 92.3%
3514663 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 25.0 3.26e-01 78.2% 73.3%
4514268 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 32.0 3.84e-01 92.5% 85.4%
4337720 3454.1.1.2 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC 0.55 28.0 3.80e-01 79.7% 96.9%
5021659 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 34.0 3.99e-01 94.7% 91.1%
2527935 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.53 41.0 2.86e-01 82.0% 49.5%
3413965 5.1.4.463 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_NWD2_C 0.51 37.0 2.70e-01 100.0% 24.9%
3392485 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.51 33.0 3.85e-01 91.0% 95.6%
4430771 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 3.86e-01 82.0% 82.1%
None — 0.50 34.0 2.71e-01 100.0% 31.7%
D3 high residues 331-382_441-530
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 28.0 3.17e-01 92.3% 58.5%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.57 33.0 3.72e-01 95.1% 73.6%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.56 33.0 3.69e-01 95.1% 73.0%
5wm1A05 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 34.0 3.67e-01 85.9% 76.1%
3gqcC04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 32.0 3.51e-01 85.9% 74.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948954 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 37.0 3.96e-01 93.7% 75.6%
3508294 10.32.1.196 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › WLS_GOLD 0.53 38.0 3.42e-01 100.0% 53.8%
4932993 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 32.0 3.73e-01 100.0% 92.6%
D4 high residues 542-588
PDB