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L13696.1__AAA87964.1__X__00009

Bact-Vir

L13696.1__AAA87964.1__X__00009

Identity

Accession:
L13696 ↗
Kingdom:
phage

Quality

92.2 mean pLDDT

Taxonomy

Plasmaviridae› Plasmavirus› Plasmavirus_L2

TaxID: 46014

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: rep: ON548417.1__UUV46029.1__X__00143__D2-78
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ye9A02 2.40.470.10 Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain 0.53 31.0 2.53e-01 85.2% 31.2%
5zspA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 41.0 3.25e-01 88.5% 83.7%
2yuwA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 33.0 2.93e-01 100.0% 41.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1144813 4.1.1.107 ↗ beta barrels › SH3 › SH3 › SH3 › XRN1_D1 0.60 44.0 3.17e-01 78.7% 89.8%
3859965 4.1.1.107 ↗ beta barrels › SH3 › SH3 › SH3 › XRN1_D1 0.60 48.0 3.29e-01 85.2% 95.3%
281 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 41.0 4.07e-01 90.2% 69.7%
4965392 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.56 38.0 4.17e-01 70.5% 88.0%
3739386 109.4.1.3152 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, TPR_16, TPR_19, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N 0.52 38.0 2.20e-01 78.7% 14.9%
3184736 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.52 39.0 3.34e-01 86.9% 91.3%
3222762 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 34.0 3.11e-01 90.2% 51.2%
3795553 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.51 40.0 3.57e-01 90.2% 76.3%
3355880 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 39.0 2.55e-01 90.2% 90.6%