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L1
Euk-VirMacaca_fascicularis_papillomavirus_1
L1__ABM67070__Macaca_fascicularis_papillomavirus_1__2847841
Identity
- Accession:
- ABM67070 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
84.0
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Betapapillomavirus›
Macaca_fascicularis_papillomavirus_1
TaxID: 2847841
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-58_70-111_316-346_371-421_458-486
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 115.8 | 3.40e-33 | 41.7% | 17.5% |
| PF00500.25 | Late_protein_L1 | 66.0 | 4.40e-18 | 28.9% | 10.1% |
| PF00500.25 | Late_protein_L1 | 58.4 | 8.50e-16 | 19.2% | 6.4% |
| PF00500.25 | Late_protein_L1 | 37.1 | 2.40e-09 | 16.0% | 5.8% |
D2
medium
residues 59-69_112-151_255-267_283-311_347-370
Domain cluster:
rep: L1__YP_009345082__Eidolon_helvum_papillomavirus_2__1335476__D106-161_251-269_292-310
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 40.1 | 3.00e-10 | 43.6% | 9.3% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dzlA00 | 2.60.175.20 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus | 0.91 | 88.0 | 5.61e-01 | 100.0% | 65.7% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2806413 | 10.2.1.4 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 | 0.93 | 90.0 | 5.71e-01 | 100.0% | 64.1% |
| 2707156 | 10.2.1.4 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 | 0.92 | 89.0 | 5.62e-01 | 100.0% | 61.7% |
D3
medium
residues 152-254
Domain cluster:
rep: L1__YP_009552560__Gammapapillomavirus_sp.__2049444__D159-250
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 176.5 | 1.30e-51 | 100.0% | 20.9% |