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L1
Euk-VirCapreolus_capreolus_papillomavirus_1
L1__YP_002004574__Capreolus_capreolus_papillomavirus_1__470214
Identity
- Accession:
- YP_002004574 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
82.2
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Deltapapillomavirus›
Capreolus_capreolus_papillomavirus_1
TaxID: 470214
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 114-136_161-295
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 185.2 | 3.00e-54 | 89.2% | 27.0% |
D2
medium
residues 22-35_78-102_303-320_366-403
Domain cluster:
rep: L1__YP_009315925__Equus_caballus_papillomavirus_8__1912759__D72-106_315-329_368-402
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 43.5 | 2.80e-11 | 41.0% | 7.6% |
D3
medium
residues 36-77_103-113_137-160_321-365_448-465
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 44.5 | 1.40e-11 | 35.0% | 9.5% |
| PF00500.25 | Late_protein_L1 | 58.8 | 6.40e-16 | 33.6% | 8.8% |