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L1
Euk-VirHuman_papillomavirus_127
L1__YP_003858579__Human_papillomavirus_127__746832
Identity
- Accession:
- YP_003858579 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
83.5
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Gammapapillomavirus›
Human_papillomavirus_127
TaxID: 746832
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-113_312-415_453-482
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 155.1 | 4.20e-45 | 48.4% | 20.1% |
| PF00500.25 | Late_protein_L1 | 133.4 | 1.50e-38 | 39.8% | 17.3% |
| PF00500.25 | Late_protein_L1 | 32.6 | 5.80e-08 | 14.5% | 5.8% |
D2
high
residues 119-301
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 234.2 | 4.40e-69 | 100.0% | 36.2% |