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L1
Euk-VirZalophus_californianus_papillomavirus_1
L1__YP_004346968__Zalophus_californianus_papillomavirus_1__998829
Identity
- Accession:
- YP_004346968 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
84.5
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Dyonupapillomavirus›
Zalophus_californianus_papillomavirus_1
TaxID: 998829
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-112_233-251_341-407_448-475
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 73.6 | 2.00e-20 | 38.6% | 13.9% |
| PF00500.25 | Late_protein_L1 | 109.9 | 2.10e-31 | 38.0% | 14.1% |
| PF00500.25 | Late_protein_L1 | 36.3 | 4.40e-09 | 15.8% | 5.6% |
D2
medium
residues 113-232_252-268_287-340
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 158.2 | 4.90e-46 | 63.9% | 23.7% |
| PF00500.25 | Late_protein_L1 | 89.5 | 3.20e-25 | 37.7% | 17.5% |