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L1
Euk-VirMacaca_fascicularis_papillomavirus_2
L1__YP_004646337__Macaca_fascicularis_papillomavirus_2__915424
Identity
- Accession:
- YP_004646337 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
83.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Betapapillomavirus›
Macaca_fascicularis_papillomavirus_2
TaxID: 915424
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 23-119_453-482
Domain cluster:
rep: unnamed_protein_product__YP_004895386__Canis_familiaris_papillomavirus_10__1087109__D20-62_366-406_443-470
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 168.8 | 2.90e-49 | 78.0% | 19.1% |
| PF00500.25 | Late_protein_L1 | 38.0 | 1.30e-09 | 26.0% | 5.8% |
D2
medium
residues 257-309
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dzlA00 | 2.60.175.20 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus | 0.94 | 74.0 | 4.18e-01 | 100.0% | 9.7% |