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L1
Euk-VirColobus_guereza_papillomavirus_2
L1__YP_004646343__Colobus_guereza_papillomavirus_2__889813
Identity
- Accession:
- YP_004646343 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
83.1
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Betapapillomavirus›
Colobus_guereza_papillomavirus_2
TaxID: 889813
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 23-65_78-108_318-336_386-426_465-491
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 96.6 | 2.20e-27 | 47.2% | 17.1% |
| PF00500.25 | Late_protein_L1 | 45.4 | 7.70e-12 | 25.5% | 8.1% |
| PF00500.25 | Late_protein_L1 | 33.8 | 2.50e-08 | 19.2% | 5.4% |
D2
medium
residues 66-77_109-269_337-363_375-385
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 267.1 | 4.60e-79 | 79.1% | 32.0% |
| PF00500.25 | Late_protein_L1 | 35.5 | 7.30e-09 | 19.0% | 9.0% |