L1

Euk-Vir

Morelia_spilota_papillomavirus_1

L1__YP_004857841__Morelia_spilota_papillomavirus_1__1081054

Identity

76.0 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Dyomupapillomavirus› Morelia_spilota_papillomavirus_1

TaxID: 1081054

View cluster (154 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-79_384-412

PDB

Domain cluster: rep: unnamed_protein_product__YP_004895386__Canis_familiaris_papillomavirus_10__1087109__D20-62_366-406_443-470

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	70.5	1.80e-19	65.8%	10.1%
PF00500.25	Late_protein_L1	29.4	5.50e-07	38.0%	6.0%

D2 medium residues 80-107_452-481

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	36.3	4.20e-09	53.4%	5.8%
PF00500.25	Late_protein_L1	34.0	2.20e-08	51.7%	6.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dzlA00	2.60.175.20	Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus	0.95	90.0	5.13e-01	100.0%	87.9%

D3 medium residues 108-121_249-263_312-344

PDB

Domain cluster: rep: L1__YP_009508760__Peromyscus_papillomavirus_1__1074206__D104-118_156-168_236-258_310-344

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	58.7	7.20e-16	54.8%	6.6%

D4 medium residues 122-134_150-179_191-248

PDB

Domain cluster: rep: L1__YP_009552560__Gammapapillomavirus_sp.__2049444__D159-250

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	133.9	1.10e-38	97.0%	20.3%

D5 medium residues 264-311_345-383

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	34.3	1.70e-08	57.5%	9.7%
PF00500.25	Late_protein_L1	32.4	6.40e-08	47.1%	8.1%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dzlA00	2.60.175.20	Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus	0.56	47.0	2.88e-01	86.2%	71.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2707156	10.2.1.4 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1	0.58	48.0	2.91e-01	86.2%	66.9%