L1

Euk-Vir

Canis_familiaris_papillomavirus_9

L1__YP_004895379__Canis_familiaris_papillomavirus_9__1087108

Identity

83.5 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Chipapillomavirus› Canis_familiaris_papillomavirus_9

TaxID: 1087108

View cluster (154 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 35-167_222-264_308-411_445-474

PDB

Domain cluster: rep: L2__YP_009182328__Rattus_norvegicus_papillomavirus_3__1756445__D22-110_148-252_300-402

Pfam (4)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	193.8	7.90e-57	43.2%	26.0%
PF00500.25	Late_protein_L1	161.9	3.60e-47	35.5%	21.3%
PF00500.25	Late_protein_L1	57.7	1.40e-15	14.5%	8.5%
PF00500.25	Late_protein_L1	35.9	5.90e-09	10.0%	5.8%

D2 medium residues 168-221_285-307

PDB

Domain cluster: rep: putative_L1_late_protein__YP_007518497__Equus_caballus_papillomavirus_6__1235427__D167-232

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	72.9	3.40e-20	77.9%	11.7%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dzlA00	2.60.175.20	Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus	0.97	93.0	5.51e-01	100.0%	30.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2806413	10.2.1.4 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1	0.98	95.0	5.57e-01	100.0%	30.7%
2707156	10.2.1.4 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1	0.97	94.0	5.50e-01	100.0%	29.0%