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L1
Euk-VirFelis_catus_papillomavirus_3
L1__YP_008083111__Felis_catus_papillomavirus_3__1336600
Identity
- Accession:
- YP_008083111 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
84.9
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Taupapillomavirus›
Felis_catus_papillomavirus_3
TaxID: 1336600
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-113_309-405_444-471
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 137.7 | 8.00e-40 | 47.8% | 20.1% |
| PF00500.25 | Late_protein_L1 | 127.3 | 1.10e-36 | 39.6% | 16.3% |
| PF00500.25 | Late_protein_L1 | 35.2 | 9.10e-09 | 14.0% | 5.6% |
D2
high
residues 119-151_164-231_252-297
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 121.4 | 6.80e-35 | 69.4% | 22.9% |
| PF00500.25 | Late_protein_L1 | 29.1 | 6.30e-07 | 32.0% | 9.3% |