L1

Euk-Vir

Rangifer_tarandus_papillomavirus_2

L1__YP_008378672__Rangifer_tarandus_papillomavirus_2__1370094

Identity

82.1 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Xipapillomavirus› Rangifer_tarandus_papillomavirus_2

TaxID: 1370094

View cluster (154 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 23-55_81-105_382-413_451-483

PDB

Domain cluster: rep: unnamed_protein_product__YP_004895386__Canis_familiaris_papillomavirus_10__1087109__D20-62_366-406_443-470

Pfam (4)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	30.5	2.40e-07	29.3%	6.4%
PF00500.25	Late_protein_L1	40.7	2.00e-10	28.5%	6.6%
PF00500.25	Late_protein_L1	32.3	7.00e-08	28.5%	6.4%
PF00500.25	Late_protein_L1	28.1	1.30e-06	24.4%	5.4%

D2 medium residues 56-80_106-116_143-163_302-381

PDB

Domain cluster: rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	117.5	1.00e-33	59.1%	15.3%

D3 medium residues 117-142_247-273_285-301

PDB

Domain cluster: rep: L1__YP_009345082__Eidolon_helvum_papillomavirus_2__1335476__D106-161_251-269_292-310

D4 medium residues 164-246

PDB

Domain cluster: rep: putative_L1_late_protein__YP_007518497__Equus_caballus_papillomavirus_6__1235427__D167-232

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	133.9	1.10e-38	100.0%	16.9%