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L1
Euk-VirCastor_canadensis_papillomavirus_1
L1__YP_008992244__Castor_canadensis_papillomavirus_1__1352235
Identity
- Accession:
- YP_008992244 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
82.7
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Dyosigmapapillomavirus›
Castor_canadensis_papillomavirus_1
TaxID: 1352235
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-119_318-418_454-483
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 155.8 | 2.60e-45 | 47.3% | 20.5% |
| PF00500.25 | Late_protein_L1 | 156.2 | 1.90e-45 | 41.4% | 17.7% |
| PF00500.25 | Late_protein_L1 | 35.2 | 9.20e-09 | 14.0% | 6.0% |
D2
high
residues 125-180_194-274_294-307
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 216.3 | 1.20e-63 | 100.0% | 32.4% |