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L1
Euk-VirApodemus_sylvaticus_papillomavirus_1
L1__YP_009058918__Apodemus_sylvaticus_papillomavirus_1__1036963
Identity
- Accession:
- YP_009058918 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
83.1
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Pipapillomavirus›
Apodemus_sylvaticus_papillomavirus_1
TaxID: 1036963
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-111_310-415_453-477
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 171.6 | 4.10e-50 | 52.6% | 21.5% |
| PF00500.25 | Late_protein_L1 | 129.4 | 2.50e-37 | 37.8% | 15.9% |
| PF00500.25 | Late_protein_L1 | 27.8 | 1.60e-06 | 12.4% | 5.0% |
D2
high
residues 117-228_248-300
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 173.0 | 1.50e-50 | 68.5% | 22.9% |
| PF00500.25 | Late_protein_L1 | 30.9 | 1.90e-07 | 32.7% | 9.5% |