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L1
Euk-VirHuman_papillomavirus_KC5
L1__YP_009134749__Human_papillomavirus_KC5__1647924
Identity
- Accession:
- YP_009134749 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
84.9
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Gammapapillomavirus›
Human_papillomavirus_KC5
TaxID: 1647924
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-114_311-353_365-413_451-480
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 145.7 | 2.90e-42 | 45.0% | 20.1% |
| PF00500.25 | Late_protein_L1 | 141.6 | 5.00e-41 | 42.6% | 17.7% |
| PF00500.25 | Late_protein_L1 | 31.3 | 1.40e-07 | 15.2% | 5.8% |
D2
high
residues 120-270_288-300
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 215.1 | 2.60e-63 | 98.2% | 31.0% |