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L1
Euk-VirHuman_papillomavirus_201
L1__YP_009158858__Human_papillomavirus_201__1682340
Identity
- Accession:
- YP_009158858 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
84.2
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Gammapapillomavirus›
Human_papillomavirus_201
TaxID: 1682340
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-114_318-415_453-482
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 151.4 | 5.60e-44 | 46.3% | 19.5% |
| PF00500.25 | Late_protein_L1 | 138.5 | 4.50e-40 | 41.7% | 17.7% |
| PF00500.25 | Late_protein_L1 | 35.6 | 6.90e-09 | 14.7% | 6.2% |
D2
medium
residues 127-152_164-304
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 191.2 | 4.70e-56 | 100.0% | 34.8% |