L1

Euk-Vir

human_papillomavirus_163

L1__YP_009175019__human_papillomavirus_163__1315262

Identity

84.8 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Gammapapillomavirus› human_papillomavirus_163

TaxID: 1315262

View cluster (154 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 25-38_384-399_449-482

PDB

Domain cluster: rep: L1__YP_009408622__Felis_catus_papillomavirus_type_5__2025339__D26-43_369-402_442-465

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	40.0	3.30e-10	56.2%	6.6%

D2 medium residues 39-121_368-383

PDB

Domain cluster: rep: L1__YP_009553277__Macaca_mulatta_papillomavirus_7__2364644__D27-66_98-117_176-192_233-247_376-397

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	135.9	2.70e-39	89.9%	17.1%

D3 medium residues 122-147_161-215_252-309

PDB

Domain cluster: rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	82.9	3.20e-23	59.0%	19.1%
PF00500.25	Late_protein_L1	43.9	2.10e-11	44.6%	10.9%

D4 medium residues 148-160_216-251_310-351_400-417

PDB

Domain cluster: rep: L1__YP_009508760__Peromyscus_papillomavirus_1__1074206__D104-118_156-168_236-258_310-344

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	73.1	3.10e-20	40.4%	8.5%
PF00500.25	Late_protein_L1	38.8	7.60e-10	36.7%	7.6%