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L1
Euk-VirTrichechus_manatus_latirostris_papillomavirus_4
L1__YP_009177730__Trichechus_manatus_latirostris_papillomavirus_4__2848317
Identity
- Accession:
- YP_009177730 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
84.3
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Rhopapillomavirus›
Trichechus_manatus_latirostris_papillomavirus_4
TaxID: 2848317
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-110_310-412
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 157.1 | 1.00e-45 | 55.9% | 20.3% |
| PF00500.25 | Late_protein_L1 | 139.0 | 3.20e-40 | 45.2% | 16.9% |
D2
high
residues 116-298
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 250.5 | 5.00e-74 | 100.0% | 36.2% |