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L1
Euk-VirCervus_papillomavirus_2
L1__YP_009252396__Cervus_papillomavirus_2__1434070
Identity
- Accession:
- YP_009252396 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
83.2
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Epsilonpapillomavirus›
Cervus_papillomavirus_2
TaxID: 1434070
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-68_104-127_139-167_189-238_325-363
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 42.5 | 5.80e-11 | 29.1% | 12.9% |
| PF00500.25 | Late_protein_L1 | 71.4 | 1.00e-19 | 28.6% | 10.3% |
| PF00500.25 | Late_protein_L1 | 54.3 | 1.50e-14 | 25.4% | 10.3% |
| PF00500.25 | Late_protein_L1 | 28.5 | 1.00e-06 | 21.2% | 7.8% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dzlA00 | 2.60.175.20 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus | 0.98 | 96.0 | 6.87e-01 | 100.0% | 76.0% |
| 5mmjj00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 22.0 | 2.87e-01 | 92.6% | 69.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2707156 | 10.2.1.4 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 | 0.98 | 96.0 | 6.76e-01 | 100.0% | 71.6% |
| 2806413 | 10.2.1.4 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 | 0.98 | 96.0 | 6.80e-01 | 100.0% | 73.8% |
| 3354933 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.50 | 23.0 | 2.91e-01 | 94.2% | 69.5% |
D2
medium
residues 69-82_239-262_294-324
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 50.6 | 2.00e-13 | 47.8% | 6.2% |
D3
medium
residues 83-103_364-397_441-467
Domain cluster:
rep: L1__YP_009551921__Serinus_canaria_papillomavirus_1__2094713__D83-102_358-385_453-473
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 29.7 | 4.40e-07 | 43.9% | 6.8% |
| PF00500.25 | Late_protein_L1 | 34.2 | 1.80e-08 | 32.9% | 5.4% |