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L1

Euk-Vir

Sparus_aurata_papillomavirus_1

L1__YP_009272704__Sparus_aurata_papillomavirus_1__1885928

Identity

Accession:
YP_009272704 ↗
Protein ID:
L1
Kingdom:
euk

Quality

57.3 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Alefpapillomavirus› Sparus_aurata_papillomavirus_1

TaxID: 1885928

Cluster

View cluster (154 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 479-537
PDB
D2 medium residues 113-169_219-333_373-416
PDB
Domain cluster: rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00500.25 best Late_protein_L1 45.5 6.80e-12 19.4% 7.4%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dzlA00 2.60.175.20 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus 0.89 87.0 6.50e-01 100.0% 62.0%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.63 29.0 3.82e-01 96.8% 77.8%
3lqcA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 31.0 3.63e-01 96.8% 67.5%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.60 25.0 3.53e-01 96.8% 77.9%
8hhvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 27.0 3.52e-01 95.8% 73.8%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 27.0 3.30e-01 97.2% 63.2%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 25.0 3.19e-01 95.8% 65.9%
3s7vC00 2.60.175.10 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus 0.57 53.0 4.85e-01 96.8% 79.5%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 27.0 3.26e-01 96.3% 65.3%
1owwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 23.0 3.42e-01 95.8% 87.1%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2806413 10.2.1.4 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 0.89 87.0 6.44e-01 100.0% 60.5%
2707156 10.2.1.4 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 0.89 87.0 6.39e-01 100.0% 58.4%
4002321 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 27.0 3.85e-01 96.8% 77.7%
5008219 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 28.0 3.96e-01 97.2% 87.0%
3544717 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 31.0 3.72e-01 96.8% 69.0%
5048740 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 26.0 3.42e-01 96.8% 67.0%
3898106 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 30.0 3.82e-01 96.8% 75.4%
4047081 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.62 25.0 3.78e-01 96.3% 90.6%
4092778 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 26.0 3.30e-01 95.8% 63.1%
3881109 10.32.1.7 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › XRCC1_N 0.61 30.0 3.57e-01 96.8% 65.8%
4654760 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.60 26.0 3.17e-01 95.8% 59.3%
4567712 10.32.1.48 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 0.60 29.0 3.67e-01 96.8% 76.0%
5027230 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.59 23.0 3.47e-01 96.3% 84.7%
3519875 10.32.1.7 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › XRCC1_N 0.59 26.0 3.80e-01 92.1% 90.0%
1069108 10.2.1.58 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Gp10-like 0.58 26.0 3.55e-01 97.2% 79.3%
4960943 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 28.0 3.71e-01 96.3% 84.5%
2883092 5095.1.1.1 ↗ beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › PA14 0.58 25.0 3.15e-01 96.3% 63.7%
4960572 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 29.0 3.27e-01 96.3% 61.8%
3508089 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.57 28.0 3.13e-01 96.3% 57.6%
1279881 10.12.1.22 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI 0.56 24.0 2.81e-01 96.3% 53.1%
423236 10.2.1.6 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat 0.56 51.0 4.73e-01 96.8% 77.8%
4054625 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 28.0 3.10e-01 97.2% 58.2%
3701530 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 22.0 3.15e-01 89.4% 73.6%
4000172 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.55 25.0 3.37e-01 95.8% 80.0%
4127487 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.54 28.0 3.00e-01 96.8% 55.1%
3620151 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 26.0 3.41e-01 96.8% 81.7%
5055293 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 22.0 3.23e-01 94.4% 87.1%
3302977 207.1.1.37 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.54 28.0 2.43e-01 95.8% 31.0%
3586708 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.53 27.0 2.65e-01 95.8% 43.0%
3277196 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.52 20.0 3.01e-01 94.0% 83.5%
3710431 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.50 23.0 3.37e-01 97.2% 96.8%