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L1
Euk-VirLeptonychotes_weddellii_papillomavirus_1
L1__YP_009465963__Leptonychotes_weddellii_papillomavirus_1__2077302
Identity
- Accession:
- YP_009465963 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
79.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Leptonychotes_weddellii_papillomavirus_1
TaxID: 2077302
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 54-140_357-453_488-517
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 128.9 | 3.70e-37 | 46.7% | 18.9% |
| PF00500.25 | Late_protein_L1 | 132.7 | 2.70e-38 | 41.1% | 16.9% |
| PF00500.25 | Late_protein_L1 | 33.8 | 2.40e-08 | 14.9% | 6.0% |
D2
medium
residues 143-180_218-276_288-356
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 164.8 | 4.80e-48 | 78.3% | 27.0% |