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L1
Euk-VirLeptonychotes_weddellii_papillomavirus_2
L1__YP_009465993__Leptonychotes_weddellii_papillomavirus_2__2077303
Identity
- Accession:
- YP_009465993 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
81.0
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Leptonychotes_weddellii_papillomavirus_2
TaxID: 2077303
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-117_330-424_460-489
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 122.8 | 2.60e-35 | 49.3% | 18.7% |
| PF00500.25 | Late_protein_L1 | 113.6 | 1.50e-32 | 39.4% | 15.5% |
| PF00500.25 | Late_protein_L1 | 33.5 | 3.10e-08 | 15.3% | 5.8% |
D2
medium
residues 127-240_254-309
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 170.1 | 1.20e-49 | 100.0% | 35.2% |