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L1

Euk-Vir

Human_papillomavirus_175

L1__YP_009507310__Human_papillomavirus_175__1434782

Identity

Accession:: YP_009507310 ↗
Protein ID:: L1
Kingdom:: euk

Quality

84.0 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Gammapapillomavirus› Human_papillomavirus_175

TaxID: 1434782

Cluster

View cluster (154 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 120-160_162-272_287-299

PDB

Domain cluster: rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	216.6	9.60e-64	98.8%	30.8%

D2 medium residues 24-38_69-107_314-342_376-403_457-480

PDB

Domain cluster: rep: unnamed_protein_product__YP_004895386__Canis_familiaris_papillomavirus_10__1087109__D20-62_366-406_443-470

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	53.4	2.80e-14	31.1%	7.8%
PF00500.25	Late_protein_L1	47.3	1.90e-12	23.7%	5.8%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dzlA00	2.60.175.20	Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus	0.99	97.0	6.35e-01	100.0%	99.1%
3i2dA01	2.60.120.780	Mainly Beta › Sandwich › Jelly Rolls › PINIT domain	0.53	37.0	3.58e-01	71.1%	87.1%
3hluA00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	22.0	2.88e-01	70.4%	65.8%
3v4vB01	2.60.40.1510	Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3	0.52	33.0	3.44e-01	84.4%	67.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2707156	10.2.1.4 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1	0.98	96.0	6.23e-01	100.0%	93.4%
2806413	10.2.1.4 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1	0.98	96.0	6.25e-01	100.0%	96.0%
3560202	11.2.1.1 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2	0.55	42.0	3.02e-01	79.3%	40.5%
1863	11.1.5.19 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adhesin_Dr	0.55	39.0	3.90e-01	73.3%	100.0%
3922560	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.54	34.0	3.99e-01	84.4%	90.5%
3619352	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.54	41.0	3.94e-01	81.5%	100.0%
3626140	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.51	36.0	3.52e-01	80.0%	65.3%
4254014	10.32.1.19 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC	0.51	33.0	3.65e-01	81.5%	80.9%
4951746	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.51	35.0	3.88e-01	81.5%	89.5%
4217963	10.32.1.19 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC	0.50	33.0	3.72e-01	80.7%	85.7%
4012587	10.32.1.232 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4360	0.50	38.0	3.57e-01	80.0%	68.2%
3467037	11.2.1.1 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2	0.50	38.0	3.55e-01	80.0%	74.7%

D3 medium residues 39-68_343-375

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dzlA00	2.60.175.20	Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus	0.85	80.0	4.65e-01	100.0%	72.7%
3rmhB00	2.40.50.810	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.56	42.0	3.33e-01	81.0%	58.6%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3645719	223.1.1.79 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_NLP	0.56	47.0	3.38e-01	96.8%	69.2%
3799881	304.102.1.3 ↗	a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1	0.53	37.0	2.47e-01	76.2%	57.7%