L1

Euk-Vir

Macaca_mulatta_papillomavirus_5

L1__YP_009552786__Macaca_mulatta_papillomavirus_5__2364645

Identity

83.0 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Gammapapillomavirus› Macaca_mulatta_papillomavirus_5

TaxID: 2364645

View cluster (154 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-71_95-119_246-267_315-361_380-390

PDB

Domain cluster: rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	68.7	6.60e-19	37.5%	9.5%
PF00500.25	Late_protein_L1	66.3	3.30e-18	35.0%	10.7%

D2 medium residues 72-94_391-418_454-483

PDB

Domain cluster: rep: L1__YP_004857841__Morelia_spilota_papillomavirus_1__1081054__D80-107_452-481

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	32.8	4.80e-08	40.7%	6.2%

D3 medium residues 120-134_146-245

PDB

Domain cluster: rep: L1__YP_009552560__Gammapapillomavirus_sp.__2049444__D159-250

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	161.9	3.70e-47	100.0%	25.6%