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L1
Euk-VirMacaca_mulatta_papillomavirus_2
L1__YP_009553210__Macaca_mulatta_papillomavirus_2__2294150
Identity
- Accession:
- YP_009553210 ↗
- Protein ID:
- L1
- Kingdom:
- euk
Quality
82.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Macaca_mulatta_papillomavirus_2
TaxID: 2294150
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 19-46_336-369
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 32.9 | 4.50e-08 | 48.4% | 5.6% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dzlA00 | 2.60.175.20 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus | 0.95 | 87.0 | 5.03e-01 | 96.8% | 77.4% |
| 5mmjj00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.50 | 35.0 | 3.11e-01 | 74.2% | 97.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2806413 | 10.2.1.4 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 | 0.96 | 92.0 | 5.27e-01 | 100.0% | 75.5% |
| 3497701 | 304.9.1.81 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A | 0.58 | 40.0 | 3.15e-01 | 74.2% | 80.4% |
| 4573225 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.53 | 37.0 | 3.21e-01 | 75.8% | 58.2% |
| 4024347 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.52 | 36.0 | 2.97e-01 | 74.2% | 87.2% |
| 3477312 | 304.9.1.81 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A | 0.52 | 35.0 | 2.50e-01 | 74.2% | 50.4% |
| 4939613 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.51 | 29.0 | 2.36e-01 | 96.8% | 23.1% |
| 4455016 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.51 | 35.0 | 3.05e-01 | 74.2% | 66.4% |
| 4322566 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.51 | 34.0 | 3.04e-01 | 71.0% | 76.8% |
D2
medium
residues 47-109_153-250_319-335_370-406_439-471
Domain cluster:
rep: L2__YP_009182328__Rattus_norvegicus_papillomavirus_3__1756445__D22-110_148-252_300-402
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 161.6 | 4.50e-47 | 40.3% | 19.7% |
| PF00500.25 | Late_protein_L1 | 96.7 | 2.10e-27 | 26.2% | 13.1% |
| PF00500.25 | Late_protein_L1 | 40.0 | 3.30e-10 | 16.5% | 7.6% |
| PF00500.25 | Late_protein_L1 | 42.5 | 5.60e-11 | 14.9% | 6.8% |
D3
medium
residues 110-152_251-265_289-318
Domain cluster:
rep: L1_gene_product__YP_006202695__Papio_hamadryas_papillomavirus_1__990303__D108-155_249-262_283-313_333-358
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 44.6 | 1.30e-11 | 56.8% | 9.9% |
| PF00500.25 | Late_protein_L1 | 46.2 | 4.20e-12 | 44.3% | 6.8% |